Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRD87_RS00630 Genome accession   NZ_CP128109
Coordinates   110646..112025 (+) Length   459 a.a.
NCBI ID   WP_159145309.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105646..117025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS00610 (QRD87_00610) - 105988..106452 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  QRD87_RS00615 (QRD87_00615) - 106467..107024 (+) 558 WP_007496258.1 UvrB/UvrC motif-containing protein -
  QRD87_RS00620 (QRD87_00620) - 107029..108120 (+) 1092 WP_008345444.1 protein arginine kinase -
  QRD87_RS00625 (QRD87_00625) clpC 108117..110552 (+) 2436 WP_007496263.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QRD87_RS00630 (QRD87_00630) radA 110646..112025 (+) 1380 WP_159145309.1 DNA repair protein RadA Machinery gene
  QRD87_RS00635 (QRD87_00635) disA 112028..113107 (+) 1080 WP_007496267.1 DNA integrity scanning diadenylate cyclase DisA -
  QRD87_RS00640 (QRD87_00640) - 113261..114361 (+) 1101 WP_003217214.1 PIN/TRAM domain-containing protein -
  QRD87_RS00645 (QRD87_00645) ispD 114375..115064 (+) 690 WP_008345432.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRD87_RS00650 (QRD87_00650) ispF 115068..115544 (+) 477 WP_007496273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50025.44 Da        Isoelectric Point: 7.1218

>NTDB_id=845823 QRD87_RS00630 WP_159145309.1 110646..112025(+) (radA) [Bacillus altitudinis strain D9_B_49]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLSIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=845823 QRD87_RS00630 WP_159145309.1 110646..112025(+) (radA) [Bacillus altitudinis strain D9_B_49]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCCGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGAGCGGACCGTCTCAGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACTGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACCGCCCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TCGTTGGTCACGTGACGAAGGAGGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTAGATACAGTTCTTTATTTT
GAAGGGGAGCGTCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCAACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTACTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGTGGTGTGAAACTTGATGAACCAGCGATTGACTTGGCTA
TTGCCGTTAGTATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

86.9

99.782

0.867
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608