Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRD87_RS00290 Genome accession   NZ_CP128109
Coordinates   47060..47350 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42060..52350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS00250 (QRD87_00250) - 42093..42422 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  QRD87_RS00255 (QRD87_00255) - 42435..42875 (+) 441 WP_008341898.1 YaaR family protein -
  QRD87_RS00260 (QRD87_00260) holB 42887..43876 (+) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  QRD87_RS00265 (QRD87_00265) - 43879..44706 (+) 828 WP_277687467.1 stage 0 sporulation family protein -
  QRD87_RS00270 (QRD87_00270) yabA 44721..45074 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  QRD87_RS00275 (QRD87_00275) - 45130..45873 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRD87_RS00280 (QRD87_00280) - 45860..46159 (+) 300 WP_024719353.1 GIY-YIG nuclease family protein -
  QRD87_RS00285 (QRD87_00285) rsmI 46134..47015 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRD87_RS00290 (QRD87_00290) abrB 47060..47350 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRD87_RS00295 (QRD87_00295) metG 47870..49870 (+) 2001 WP_203143919.1 methionine--tRNA ligase -
  QRD87_RS00300 (QRD87_00300) - 49952..50719 (+) 768 WP_017359325.1 TatD family hydrolase -
  QRD87_RS00305 (QRD87_00305) - 50964..52166 (+) 1203 WP_017359324.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=845821 QRD87_RS00290 WP_087975202.1 47060..47350(-) (abrB) [Bacillus altitudinis strain D9_B_49]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=845821 QRD87_RS00290 WP_087975202.1 47060..47350(-) (abrB) [Bacillus altitudinis strain D9_B_49]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938