Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   V2176_RS20260 Genome accession   NZ_CP143963
Coordinates   3910666..3910896 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain FUA2151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3905666..3915896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS20230 (V2176_20230) ridA 3905723..3906100 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  V2176_RS20235 (V2176_20235) spoVG 3906280..3906573 (+) 294 WP_003178198.1 septation regulator SpoVG -
  V2176_RS20240 (V2176_20240) glmU 3906878..3908248 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  V2176_RS20245 (V2176_20245) - 3908269..3909219 (+) 951 WP_330938004.1 ribose-phosphate diphosphokinase -
  V2176_RS20250 (V2176_20250) - 3909300..3909926 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  V2176_RS20255 (V2176_20255) pth 3910043..3910609 (+) 567 WP_017474858.1 aminoacyl-tRNA hydrolase -
  V2176_RS20260 (V2176_20260) subA/fin 3910666..3910896 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  V2176_RS20265 (V2176_20265) mfd 3910961..3914494 (+) 3534 WP_003178212.1 transcription-repair coupling factor -
  V2176_RS20270 (V2176_20270) spoVT 3914632..3915168 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=845803 V2176_RS20260 WP_003178210.1 3910666..3910896(+) (subA/fin) [Bacillus licheniformis strain FUA2151]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=845803 V2176_RS20260 WP_003178210.1 3910666..3910896(+) (subA/fin) [Bacillus licheniformis strain FUA2151]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776