Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JQN54_RS11015 Genome accession   NZ_AP024305
Coordinates   2035427..2035735 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5008     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030427..2040735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS10985 (TthHB5008_21830) - 2031508..2031972 (+) 465 WP_203971375.1 hypothetical protein -
  JQN54_RS10990 (TthHB5008_21840) pfkA 2031949..2032917 (-) 969 WP_011173968.1 6-phosphofructokinase -
  JQN54_RS10995 (TthHB5008_21850) rsmI 2032914..2033708 (-) 795 WP_203971377.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JQN54_RS11000 (TthHB5008_21860) - 2033710..2034204 (-) 495 WP_011173970.1 hypothetical protein -
  JQN54_RS11005 (TthHB5008_21870) - 2034268..2034795 (-) 528 WP_011173971.1 inorganic diphosphatase -
  JQN54_RS11010 (TthHB5008_21880) - 2034828..2035454 (+) 627 WP_011173972.1 YcxB family protein -
  JQN54_RS11015 (TthHB5008_21890) comEA 2035427..2035735 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  JQN54_RS11020 (TthHB5008_21900) comA/comEC 2035732..2037765 (+) 2034 WP_203971379.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JQN54_RS11025 (TthHB5008_21910) - 2037753..2038562 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein -
  JQN54_RS11030 (TthHB5008_21920) soj 2038546..2039295 (-) 750 WP_203971381.1 chromosome-partitioning ATPase Soj -
  JQN54_RS11035 (TthHB5008_21930) rsmG 2039289..2040038 (-) 750 WP_203971383.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=84580 JQN54_RS11015 WP_024119555.1 2035427..2035735(+) (comEA) [Thermus thermophilus strain HB5008]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=84580 JQN54_RS11015 WP_024119555.1 2035427..2035735(+) (comEA) [Thermus thermophilus strain HB5008]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTCCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422

Multiple sequence alignment