Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRY07_RS10390 Genome accession   NZ_CP128107
Coordinates   1918221..1918508 (+) Length   95 a.a.
NCBI ID   WP_002200810.1    Uniprot ID   J8AWC2
Organism   Bacillus cereus strain D5_B_69     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1913221..1923508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY07_RS10370 (QRY07_10370) - 1914392..1914592 (+) 201 WP_002200812.1 DUF4083 domain-containing protein -
  QRY07_RS10375 (QRY07_10375) - 1914620..1915081 (+) 462 WP_002158230.1 NUDIX hydrolase -
  QRY07_RS10380 (QRY07_10380) nadE 1915131..1915949 (-) 819 WP_002158229.1 ammonia-dependent NAD(+) synthetase -
  QRY07_RS10385 (QRY07_10385) - 1916220..1918100 (+) 1881 WP_002200811.1 ABC transporter permease -
  QRY07_RS10390 (QRY07_10390) abrB 1918221..1918508 (+) 288 WP_002200810.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRY07_RS10395 (QRY07_10395) - 1918689..1919639 (+) 951 WP_002158227.1 serine protease -
  QRY07_RS10400 (QRY07_10400) - 1919724..1919825 (+) 102 Protein_1829 IS6 family transposase -
  QRY07_RS10405 (QRY07_10405) ugpC 1919840..1920943 (-) 1104 WP_002200809.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  QRY07_RS10410 (QRY07_10410) - 1921347..1922210 (-) 864 WP_002200808.1 helix-turn-helix domain-containing protein -
  QRY07_RS10415 (QRY07_10415) - 1922280..1923140 (-) 861 WP_002200807.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10594.31 Da        Isoelectric Point: 5.1423

>NTDB_id=845790 QRY07_RS10390 WP_002200810.1 1918221..1918508(+) (abrB) [Bacillus cereus strain D5_B_69]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLASGSITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=845790 QRY07_RS10390 WP_002200810.1 1918221..1918508(+) (abrB) [Bacillus cereus strain D5_B_69]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATTAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAGTGGAAGCATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AWC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547