Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QRY07_RS06650 Genome accession   NZ_CP128107
Coordinates   1199918..1201744 (+) Length   608 a.a.
NCBI ID   WP_002201373.1    Uniprot ID   -
Organism   Bacillus cereus strain D5_B_69     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194918..1206744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY07_RS06630 (QRY07_06630) - 1195129..1195803 (-) 675 WP_002201377.1 TerC family protein -
  QRY07_RS06635 (QRY07_06635) mecA 1196241..1196924 (+) 684 WP_002201376.1 adaptor protein MecA Regulator
  QRY07_RS06640 (QRY07_06640) - 1196997..1198541 (+) 1545 WP_002201375.1 cardiolipin synthase -
  QRY07_RS06645 (QRY07_06645) - 1198632..1199867 (+) 1236 WP_199659870.1 competence protein CoiA family protein -
  QRY07_RS06650 (QRY07_06650) pepF 1199918..1201744 (+) 1827 WP_002201373.1 oligoendopeptidase F Regulator
  QRY07_RS06655 (QRY07_06655) - 1201891..1202064 (-) 174 WP_000748141.1 hypothetical protein -
  QRY07_RS06660 (QRY07_06660) - 1202294..1203187 (-) 894 WP_002158882.1 ClpXP adapter SpxH family protein -
  QRY07_RS06665 (QRY07_06665) - 1203187..1203585 (-) 399 WP_286119267.1 globin -
  QRY07_RS06670 (QRY07_06670) - 1203770..1204348 (-) 579 WP_215597306.1 CYTH domain-containing protein -
  QRY07_RS06675 (QRY07_06675) - 1204493..1204864 (+) 372 WP_002149812.1 hypothetical protein -
  QRY07_RS06680 (QRY07_06680) - 1204895..1205533 (+) 639 WP_002201371.1 GTP pyrophosphokinase family protein -
  QRY07_RS06685 (QRY07_06685) - 1205552..1206349 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70304.64 Da        Isoelectric Point: 4.6198

>NTDB_id=845786 QRY07_RS06650 WP_002201373.1 1199918..1201744(+) (pepF) [Bacillus cereus strain D5_B_69]
MAEQNTVKSLPNRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGTYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=845786 QRY07_RS06650 WP_002201373.1 1199918..1201744(+) (pepF) [Bacillus cereus strain D5_B_69]
ATGGCTGAACAAAATACAGTGAAATCATTGCCAAATCGTAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGAA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACATTGCAAACTTTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGTCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACATACGGAACATATAAGAACACATTTGCAAGTACG
TTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACCAATCCATATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCTTCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAACCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTCGGGGACGCTTTAGT
AATTGATAAAGAAATCGGTTTAGAATGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTTTGTCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCACTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492