Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   V2176_RS04335 Genome accession   NZ_CP143963
Coordinates   864465..865613 (+) Length   382 a.a.
NCBI ID   WP_017474218.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2151     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 859465..870613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS04315 (V2176_04315) - 860013..860468 (+) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -
  V2176_RS04320 (V2176_04320) - 860491..861993 (+) 1503 WP_017474220.1 tripartite tricarboxylate transporter permease -
  V2176_RS04325 (V2176_04325) - 862013..862729 (-) 717 WP_009328827.1 response regulator -
  V2176_RS04330 (V2176_04330) - 862752..864347 (-) 1596 WP_017474219.1 sensor histidine kinase -
  V2176_RS04335 (V2176_04335) coiA 864465..865613 (+) 1149 WP_017474218.1 competence protein CoiA family protein Machinery gene
  V2176_RS04340 (V2176_04340) pepF 865826..867655 (+) 1830 WP_282334326.1 oligoendopeptidase F Regulator
  V2176_RS04345 (V2176_04345) - 867712..867879 (-) 168 WP_009328823.1 hypothetical protein -
  V2176_RS04350 (V2176_04350) spxH 868291..869193 (-) 903 WP_009328822.1 protease adaptor protein SpxH -
  V2176_RS04355 (V2176_04355) - 869190..869588 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  V2176_RS04360 (V2176_04360) - 869870..870523 (-) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 44663.06 Da        Isoelectric Point: 9.9815

>NTDB_id=845697 V2176_RS04335 WP_017474218.1 864465..865613(+) (coiA) [Bacillus licheniformis strain FUA2151]
MFSAMIDQGGTICLADGYKAEDLKRLRKRHAFYCPVCRCELDLKIGSVKLPHFAHKPDAACPVPHEPESPYHLKGKRLLY
EWLGRQGLRPVLEPYLQEIRQRPDLLLEHGTRQVAVEFQCANLNAAAYRKRTEGFLRLGIEPVWILGGNRIKRLTGDLFQ
LSRFHWQFIQKSDKPPKLLFFCPEQKAFIILEHLIPFQTNKTSASLRFLPLAEASWRNVTERESRSPLQLKGWKKNILSF
RMSAVRFLSKETKQIAALFYENHQLPLPFFPSEAFLPVLSGYIFAHPVYVWQGYLFLFITKHDTFRLQSALHYMDWLIKG
KRLKLRWSGRQTAADAVGEYICFLHKKGFLVRKEEFYYSAGSFVPEPRLEALLKRDEHYFSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=845697 V2176_RS04335 WP_017474218.1 864465..865613(+) (coiA) [Bacillus licheniformis strain FUA2151]
ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTGCCTTGCCGACGGATACAAAGCCGAAGATCTCAAGCGATTGAG
AAAAAGACATGCATTTTACTGCCCGGTGTGCCGGTGTGAACTCGACCTGAAAATCGGTTCCGTCAAGCTTCCGCATTTCG
CTCATAAGCCGGATGCAGCATGTCCGGTGCCCCATGAACCGGAGAGCCCCTATCACCTGAAAGGAAAGCGGCTGTTGTAC
GAATGGCTTGGCAGACAAGGACTCCGCCCGGTGCTTGAACCGTATTTGCAAGAGATCAGACAAAGGCCCGATTTGCTGCT
GGAACACGGAACCCGCCAGGTTGCGGTTGAATTTCAATGTGCGAATCTCAATGCCGCAGCGTATCGCAAAAGGACCGAAG
GCTTTCTCAGACTGGGAATCGAGCCCGTATGGATTCTCGGCGGAAACCGGATAAAACGCTTGACGGGGGATTTATTTCAG
CTTTCGCGGTTTCACTGGCAGTTCATTCAGAAAAGCGACAAGCCCCCAAAGCTCCTGTTTTTTTGCCCCGAACAAAAGGC
TTTCATCATCCTCGAACACCTCATTCCCTTTCAAACAAACAAAACATCCGCATCCTTGCGCTTTCTTCCTCTTGCTGAAG
CAAGCTGGCGTAATGTAACAGAACGAGAAAGCCGTTCGCCTCTCCAGCTCAAAGGCTGGAAAAAGAACATCCTCAGCTTT
CGGATGTCGGCCGTGCGTTTTTTATCAAAAGAAACGAAGCAGATTGCCGCCCTCTTTTATGAAAATCATCAGCTTCCGCT
CCCGTTTTTTCCCTCAGAAGCCTTTCTCCCGGTGCTGTCAGGCTATATTTTTGCCCACCCGGTTTATGTATGGCAAGGGT
ACCTTTTTTTATTTATAACGAAGCATGATACATTTCGCCTGCAGTCTGCGCTTCACTATATGGACTGGCTCATCAAGGGC
AAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACGGCTGCGGATGCCGTCGGTGAATACATTTGTTTTTTGCATAAAAA
AGGATTTTTGGTGAGGAAAGAGGAATTTTATTATTCCGCGGGTTCTTTTGTTCCGGAGCCGCGGTTAGAGGCGCTGTTAA
AAAGGGATGAACATTATTTTTCCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

42.308

95.288

0.403