Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   V2176_RS03415 Genome accession   NZ_CP143963
Coordinates   675593..678553 (+) Length   986 a.a.
NCBI ID   WP_017474240.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 670593..683553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS03385 (V2176_03385) - 671278..671415 (+) 138 WP_016886158.1 hypothetical protein -
  V2176_RS03390 (V2176_03390) - 671420..671698 (+) 279 WP_003180226.1 hypothetical protein -
  V2176_RS03395 (V2176_03395) - 671773..671958 (-) 186 WP_003180228.1 YhzD family protein -
  V2176_RS03400 (V2176_03400) - 672076..672972 (+) 897 WP_003180230.1 ABC transporter ATP-binding protein -
  V2176_RS03405 (V2176_03405) - 672965..674233 (+) 1269 WP_330938104.1 ABC transporter permease -
  V2176_RS03410 (V2176_03410) - 674353..675579 (+) 1227 WP_330938105.1 DNA repair exonuclease -
  V2176_RS03415 (V2176_03415) sbcE 675593..678553 (+) 2961 WP_017474240.1 ATP-binding protein Machinery gene
  V2176_RS03420 (V2176_03420) yhaM 678610..679554 (+) 945 WP_016886154.1 3'-5' exoribonuclease YhaM -
  V2176_RS03425 (V2176_03425) - 679623..679856 (+) 234 WP_003180242.1 sporulation YhaL family protein -
  V2176_RS03430 (V2176_03430) - 679902..680762 (-) 861 WP_003180243.1 peptidylprolyl isomerase -
  V2176_RS03435 (V2176_03435) - 680926..681012 (+) 87 WP_003180245.1 YjcZ family sporulation protein -
  V2176_RS03440 (V2176_03440) - 681140..681238 (+) 99 WP_003180247.1 YjcZ family sporulation protein -
  V2176_RS03445 (V2176_03445) - 681291..681506 (-) 216 WP_003180249.1 hypothetical protein -
  V2176_RS03450 (V2176_03450) - 681585..682100 (-) 516 WP_003180250.1 DUF3267 domain-containing protein -
  V2176_RS03455 (V2176_03455) - 682314..682661 (+) 348 WP_003180252.1 YhaI family protein -
  V2176_RS03460 (V2176_03460) - 682658..683278 (-) 621 WP_330938106.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 986 a.a.        Molecular weight: 112501.36 Da        Isoelectric Point: 6.6321

>NTDB_id=845680 V2176_RS03415 WP_017474240.1 675593..678553(+) (sbcE) [Bacillus licheniformis strain FUA2151]
MNIHAIHIYGYGKFANQTFRLSPSNLHLIYGLNEAGKTTLMSFIESVLFGFPKTKRYEPKTGVIYGGMLEVGHPDFGQIR
IERTAGKPERVTVYLEDGSTKPEGFLNELLSGIDRQLYKAIYSFDVFGLQEIHKFNRDKIGRFLLFSSLFGSDAISKLDA
GLVKKQEELFKPNGRKPELNQELDRLKRLSEDLKKAKAREGGYYRLLNEKKGAEASIKESGQLLKDLEHLVLQIEQAIEI
LPAAAEMRQLKEQLASLGGSEESRFPEGGLFELEKLESHLHPKAAQLKALEEKKRGLEQRAAAFAPAEDFLEHEAEAEEL
LTAYPFYQSYTEKIASLTEQLHQINGRVQAGLDRLQIEEYDILNADTTYEYEWKLQETVQAYIELRELKRSLDERFEQAR
ADLEEAEQAHAALSNEVMPDDVRKQKEETLGRLASAGGHAGRREELILQLSYLKQEQKVRMKRRRTAFAGALCAAFAAAF
AALFFKEWFPGALLAPILLIFAAFILKKPEPSAAAAFIQKQLDDIDHSGSKGGVSDSALREELWKDDQTRQLLIAKQAEL
RQKEAEYERAIQKFEEWEKDIRPYQEKTERYLKELNLSIDPSFLADAYALIKELREEILKKRDIEKELSRLHAKKASFEA
GLRKLVTSLSLAGGSVQEQVFQLKSELESQKEKLRQKQEADVSLKHAAEQIKELAKEVEYFQSQIAELFQKAGADGREMF
VGLAKRDQARKELTARLGQLKRELGRQDEKAVMLASGHSLAELKGKLAETQEKRARIEKQLTEERQTAANFHAELARLEE
SGAVSELAYQTGMQKERVAELAKKWAAVKLIRQAVQNKIDEHKKVRLPKLLQTAETLLNPLTAGQYEKIYFSETDDSMMV
MRKDGALFCAHELSQATCEQLYLAIRFALALSHQKNVKLPFQLDDSFVHFDQERFKQVLNILKKLSGEDQQILYFTCHEH
VREAFRDEDVILLPFRNEKGGRKGDD

Nucleotide


Download         Length: 2961 bp        

>NTDB_id=845680 V2176_RS03415 WP_017474240.1 675593..678553(+) (sbcE) [Bacillus licheniformis strain FUA2151]
GTGAATATACATGCGATACATATATACGGATACGGTAAATTCGCCAATCAGACATTCCGCCTGTCTCCTTCAAATCTGCA
TTTGATCTACGGACTCAATGAAGCCGGGAAAACGACGCTCATGTCGTTTATTGAAAGCGTGCTGTTCGGTTTTCCGAAGA
CGAAACGGTACGAGCCGAAAACGGGCGTCATTTACGGGGGGATGCTTGAGGTCGGACACCCTGATTTCGGCCAAATCCGA
ATCGAACGGACGGCCGGAAAGCCCGAGCGGGTCACCGTTTACTTGGAAGACGGCAGCACGAAGCCGGAAGGTTTTTTAAA
TGAGCTGCTGTCAGGCATCGACAGGCAGCTGTATAAAGCGATCTACTCATTTGACGTGTTCGGCCTTCAGGAAATCCATA
AATTCAACCGCGACAAAATCGGCCGTTTTCTGCTGTTTTCAAGTCTGTTCGGCTCTGATGCGATTTCCAAGCTGGATGCC
GGCCTCGTGAAAAAGCAGGAAGAGCTGTTTAAACCGAACGGAAGGAAGCCGGAGCTGAACCAGGAGCTTGATCGGTTAAA
AAGGCTTTCTGAAGATTTGAAAAAGGCGAAAGCGCGGGAAGGCGGCTATTACCGTCTCTTAAACGAAAAAAAAGGCGCTG
AGGCGTCGATAAAGGAAAGCGGACAACTGCTCAAAGATCTTGAGCATCTCGTCTTACAAATCGAGCAGGCCATTGAGATT
CTGCCGGCGGCCGCGGAAATGCGCCAGCTAAAAGAGCAGCTCGCATCCCTCGGCGGCTCAGAAGAAAGCCGTTTCCCCGA
AGGCGGACTTTTCGAGCTCGAAAAGCTCGAATCCCACCTGCATCCAAAAGCGGCTCAGCTGAAGGCGCTGGAAGAAAAAA
AGCGCGGTTTGGAACAGCGCGCCGCCGCTTTTGCACCGGCTGAAGACTTCCTCGAGCACGAAGCCGAAGCGGAAGAGCTT
TTAACGGCGTATCCGTTTTACCAGTCGTATACCGAAAAAATCGCGTCTTTGACTGAACAGCTTCACCAGATAAACGGACG
GGTTCAAGCGGGGCTTGACCGCCTGCAAATCGAGGAATACGATATCCTCAATGCGGACACCACGTATGAATACGAGTGGA
AACTGCAGGAAACCGTTCAGGCATACATAGAGCTGCGCGAACTGAAGCGGTCGCTCGACGAGCGGTTTGAGCAGGCGAGG
GCTGATCTGGAGGAAGCGGAACAGGCCCATGCCGCTCTCAGCAATGAAGTGATGCCCGATGATGTCCGAAAACAAAAGGA
AGAAACCCTTGGCCGCCTTGCGTCCGCCGGCGGTCATGCCGGAAGGCGGGAAGAGCTGATCCTTCAGCTGTCCTATCTGA
AGCAAGAACAAAAAGTTCGGATGAAAAGAAGAAGGACCGCTTTTGCGGGAGCGCTTTGCGCTGCTTTTGCGGCAGCTTTT
GCGGCGCTCTTTTTCAAGGAGTGGTTCCCGGGCGCTTTGCTCGCGCCGATTTTGCTGATATTTGCCGCTTTTATTTTAAA
AAAGCCTGAGCCTTCCGCGGCGGCGGCTTTTATTCAAAAACAGCTGGATGATATTGACCACAGCGGTTCAAAAGGCGGAG
TAAGCGACAGCGCTTTAAGGGAGGAGCTGTGGAAGGACGACCAAACCCGGCAGCTCCTTATCGCCAAACAAGCTGAGCTC
AGACAGAAAGAAGCGGAATATGAAAGAGCGATTCAAAAATTCGAAGAGTGGGAAAAGGATATCCGTCCGTATCAGGAGAA
GACCGAGCGCTATTTAAAAGAGCTGAATCTTTCAATTGACCCGTCATTTTTAGCTGATGCGTACGCTTTGATTAAGGAAC
TCAGAGAGGAAATTTTGAAAAAGCGGGATATCGAGAAGGAACTGAGCCGCCTTCATGCTAAAAAAGCATCCTTTGAAGCG
GGATTGAGAAAGCTTGTCACATCCCTCAGCCTTGCGGGCGGAAGCGTCCAAGAGCAGGTGTTTCAGCTGAAAAGCGAGCT
TGAGTCCCAAAAAGAGAAACTTCGTCAAAAACAGGAAGCAGACGTGTCTTTAAAGCATGCGGCCGAACAAATCAAAGAGC
TGGCGAAAGAGGTGGAATACTTCCAATCTCAAATTGCCGAACTCTTTCAAAAAGCAGGGGCGGACGGCCGTGAGATGTTC
GTCGGACTGGCGAAGCGCGATCAAGCCAGAAAAGAACTAACGGCTAGGCTCGGGCAGCTCAAAAGAGAGCTCGGCAGACA
GGACGAGAAGGCCGTTATGCTCGCCTCAGGCCACTCTCTGGCAGAACTGAAAGGAAAGCTGGCCGAGACTCAGGAAAAAA
GAGCGCGCATAGAAAAGCAGCTGACAGAAGAAAGGCAGACGGCGGCTAATTTCCATGCAGAGCTCGCCAGACTTGAGGAA
TCAGGAGCGGTATCGGAGCTTGCCTATCAGACCGGGATGCAAAAAGAGCGGGTCGCCGAATTGGCCAAAAAGTGGGCAGC
CGTCAAGCTGATCCGGCAGGCGGTCCAAAACAAGATAGATGAACATAAGAAGGTTCGGCTTCCGAAGCTGTTACAGACGG
CTGAAACATTACTGAACCCATTGACTGCCGGACAATACGAAAAAATTTATTTTTCTGAAACAGATGATTCCATGATGGTC
ATGCGGAAAGACGGAGCTCTTTTTTGCGCACACGAACTGTCTCAGGCGACTTGTGAACAGCTCTATTTAGCGATCCGATT
CGCTCTGGCCCTCTCCCATCAAAAGAATGTCAAATTGCCGTTCCAGCTGGATGACAGCTTTGTCCACTTCGACCAAGAGA
GATTTAAACAAGTGCTGAACATTTTAAAAAAGCTTTCAGGCGAAGATCAGCAAATCTTGTATTTTACGTGTCATGAACAT
GTAAGAGAAGCTTTCCGCGATGAAGATGTGATTCTGCTGCCTTTCCGGAATGAAAAAGGTGGAAGGAAAGGAGATGACTA
A

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

44.559

98.783

0.44