Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   VXF94_RS20860 Genome accession   NZ_CP143956
Coordinates   3988359..3990137 (+) Length   592 a.a.
NCBI ID   WP_013352517.1    Uniprot ID   A0A9P1NHR8
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3983359..3995137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS20810 (VXF94_20810) - 3983765..3983968 (+) 204 WP_007407979.1 DUF6501 family protein -
  VXF94_RS20815 (VXF94_20815) - 3984364..3984708 (+) 345 WP_003153783.1 PH domain-containing protein -
  VXF94_RS20820 (VXF94_20820) - 3984753..3984986 (-) 234 WP_013352524.1 hypothetical protein -
  VXF94_RS20825 (VXF94_20825) - 3985052..3985255 (-) 204 WP_013352523.1 hypothetical protein -
  VXF94_RS20830 (VXF94_20830) - 3985326..3985808 (+) 483 WP_013352522.1 Hsp20/alpha crystallin family protein -
  VXF94_RS20835 (VXF94_20835) - 3985795..3986028 (-) 234 WP_014471901.1 hypothetical protein -
  VXF94_RS20840 (VXF94_20840) - 3986121..3986501 (+) 381 WP_013352520.1 hypothetical protein -
  VXF94_RS20845 (VXF94_20845) - 3986584..3987075 (+) 492 WP_014470304.1 TraR/DksA family transcriptional regulator -
  VXF94_RS20850 (VXF94_20850) - 3987221..3987847 (+) 627 WP_013352518.1 FMN-dependent NADH-azoreductase -
  VXF94_RS20860 (VXF94_20860) recQ 3988359..3990137 (+) 1779 WP_013352517.1 DNA helicase RecQ Machinery gene
  VXF94_RS20865 (VXF94_20865) - 3990373..3991245 (+) 873 WP_013352516.1 3D domain-containing protein -
  VXF94_RS20870 (VXF94_20870) - 3991408..3991788 (+) 381 WP_013352515.1 hypothetical protein -
  VXF94_RS20875 (VXF94_20875) - 3991825..3992802 (-) 978 WP_014471897.1 S66 peptidase family protein -
  VXF94_RS20880 (VXF94_20880) - 3992868..3993371 (-) 504 WP_013352513.1 N-acetyltransferase -
  VXF94_RS20885 (VXF94_20885) - 3993562..3994344 (+) 783 WP_014470308.1 VLRF1 family aeRF1-type release factor -
  VXF94_RS20890 (VXF94_20890) - 3994490..3995026 (+) 537 WP_013352511.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66897.33 Da        Isoelectric Point: 6.2133

>NTDB_id=845666 VXF94_RS20860 WP_013352517.1 3988359..3990137(+) (recQ) [Bacillus amyloliquefaciens strain Fad 108]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLTSPEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIHKEHTVYTGFARENLTFKVAKGENKDRFIEQYLDRNKHEAGIIYAATR
KETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLDSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGESEAEACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLNGSKNKKVLENGFSSLSTYGIMKHQTTGEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALEAAAVTENDELFEILRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDH
DLLSVKGVGEQKRLKYGALFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=845666 VXF94_RS20860 WP_013352517.1 3988359..3990137(+) (recQ) [Bacillus amyloliquefaciens strain Fad 108]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTTCTGTTTGAAGGTACCACTATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACTCAGACAAGCCGGGACATTCATGAGCGACTGACCGGTTTGAAAGAAGG
GGCTTACCGGCTCTTTTACATAACACCGGAGCGTTTGACTTCTCCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATAGACGAAGCTCACTGTATATCGCAATGGGGGCATGATTTCAGGCCGAGTTACCGGAATATTGAAATC
CTTTTTAATGAATTAAAAGAACCTCCCGTCATTATCGCGTTAACGGCGACGGCTACGCCTGAGGTTCATGATGATATCTG
CAAGCAGCTTCATATTCATAAAGAACATACTGTCTATACCGGTTTTGCCAGAGAGAATTTAACGTTCAAAGTAGCAAAGG
GCGAAAACAAAGACCGTTTTATCGAGCAGTACCTGGACAGAAATAAACACGAAGCCGGCATTATATATGCAGCGACCAGA
AAAGAAACCGACCGTATATATGAGAAATTAAAACGCAGCGGCATTAATGCCGGCCGTTATCACGGCGGATTGGCAGATGA
TGACAGAAAAGAGCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTAATGGTTGCCACGTCAGCTTTCGGAATGGGAA
TCGACAAGAGCAACATCAGATTCGTTCTCCACGCACAGATTCCAAAAGATATGGAGAGCTATTATCAGGAAGCCGGACGG
GCCGGGCGCGACGGTCTCGATAGCGAGTGCGTGCTCTTGTTTTCTCCGCAGGATATTATGGTGCAGCGCTTTTTAATAGA
CCAATCGGCAGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAGTGAGGCAGAAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACAGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGTATTATCAGAATGAATGAGCGTTTCGGAAA
AACGATGGTCGCACAGGTGCTTAACGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACATACG
GCATTATGAAGCATCAAACAACAGGGGAAATCAGTGATTTTATCGAATTCCTGATTTCAGATGAATATATCAGAATGGCG
GACGGTACATTTCCGACGCTTATGGTCACACAAAAAGGCAGGGATGTTCTGCTTGGAAAGAGCGCAGTCGCGAGAAAAGA
AGCCTTAGAGGCCGCCGCCGTTACCGAAAACGATGAATTATTTGAGATTCTCCGGCGTCTCCGCAAAGAGATCGCAGCGG
AACAAGGCGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAT
GATCTTCTTTCCGTAAAAGGGGTAGGGGAACAAAAAAGATTGAAATACGGAGCGCTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.77

100

0.828