Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VXF94_RS16905 Genome accession   NZ_CP143956
Coordinates   3266315..3267019 (+) Length   234 a.a.
NCBI ID   WP_013353233.1    Uniprot ID   A0A9P1NIE3
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261315..3272019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS16885 (VXF94_16885) - 3261799..3263064 (-) 1266 WP_013353236.1 NAD(P)/FAD-dependent oxidoreductase -
  VXF94_RS16890 (VXF94_16890) - 3263272..3264909 (+) 1638 WP_013353235.1 polysaccharide biosynthesis protein -
  VXF94_RS16895 (VXF94_16895) - 3264966..3265685 (+) 720 WP_014470837.1 pseudouridine synthase -
  VXF94_RS16900 (VXF94_16900) - 3265814..3266035 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  VXF94_RS16905 (VXF94_16905) pptA 3266315..3267019 (+) 705 WP_013353233.1 ABC transporter ATP-binding protein Regulator
  VXF94_RS16910 (VXF94_16910) - 3267016..3268176 (+) 1161 WP_014470836.1 ABC transporter permease -
  VXF94_RS16915 (VXF94_16915) - 3268211..3269515 (-) 1305 WP_013353231.1 NCS2 family permease -
  VXF94_RS16920 (VXF94_16920) pepV 3269610..3271004 (+) 1395 WP_013353230.1 dipeptidase PepV -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25859.65 Da        Isoelectric Point: 4.7536

>NTDB_id=845633 VXF94_RS16905 WP_013353233.1 3266315..3267019(+) (pptA) [Bacillus amyloliquefaciens strain Fad 108]
MGDLLNANIVSAGYADRPKVISNVSFTVNSREIAGLIGANGAGKSTVIKAILGLSRDMEGCIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIESGAWRERAGRLLDEFSLTAVKHELPSGFSKGMQQKLMLMQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGALEELQERTGGRSLLDCFYSAVRGSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=845633 VXF94_RS16905 WP_013353233.1 3266315..3267019(+) (pptA) [Bacillus amyloliquefaciens strain Fad 108]
TTGGGAGACTTATTGAATGCAAACATTGTATCCGCCGGCTATGCTGACAGGCCGAAGGTGATTTCAAATGTATCTTTTAC
GGTCAATTCGAGAGAAATTGCCGGGTTAATCGGGGCGAACGGCGCGGGAAAAAGTACAGTGATAAAGGCGATTCTCGGGC
TGTCCCGGGATATGGAAGGGTGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTATGAT
GAACTGACGCTCTGGGAGCATCTCGAGCTGACCGGATCATTACGGGGCATAGAAAGCGGAGCATGGCGTGAGCGGGCCGG
GCGGCTGCTTGATGAATTTTCATTGACGGCGGTAAAACATGAATTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTCATGCAGGCGTTTTTGGCGAAACCGGATATTTACATCATTGATGAACCGTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGTATTCTGATGTGCACCCACGTTCTGGATAC
TGCCGAAAAAATCTGCGACCGTTTTTATTTGCTGGATCAAGGCGCTCTGCTTCTTCAAGGCGCGTTAGAAGAGCTTCAGG
AAAGAACAGGGGGCCGTTCATTGTTAGATTGCTTTTATTCAGCGGTTCGGGGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NIE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

43.568

100

0.449
  pptA Streptococcus thermophilus LMD-9

42.739

100

0.44