Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   VXF94_RS16090 Genome accession   NZ_CP143956
Coordinates   3125098..3125973 (+) Length   291 a.a.
NCBI ID   WP_013353397.1    Uniprot ID   A0A9P1JJW3
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120098..3130973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS16060 (VXF94_16060) - 3120129..3120524 (+) 396 WP_013353403.1 YueI family protein -
  VXF94_RS16065 (VXF94_16065) - 3120605..3121156 (+) 552 WP_013353402.1 cysteine hydrolase family protein -
  VXF94_RS16070 (VXF94_16070) - 3121174..3122640 (+) 1467 WP_014472199.1 nicotinate phosphoribosyltransferase -
  VXF94_RS16075 (VXF94_16075) - 3122770..3123993 (+) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  VXF94_RS16080 (VXF94_16080) - 3124000..3124341 (-) 342 WP_013353399.1 hypothetical protein -
  VXF94_RS16085 (VXF94_16085) degQ 3124806..3124946 (+) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  VXF94_RS16090 (VXF94_16090) comQ 3125098..3125973 (+) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  VXF94_RS16095 (VXF94_16095) comX 3125992..3126168 (+) 177 WP_013353396.1 competence pheromone ComX -
  VXF94_RS16100 (VXF94_16100) comP 3126191..3128497 (+) 2307 WP_013353395.1 sensor histidine kinase Regulator
  VXF94_RS16105 (VXF94_16105) comA 3128578..3129222 (+) 645 WP_014472195.1 response regulator transcription factor Regulator
  VXF94_RS16110 (VXF94_16110) - 3129244..3129627 (+) 384 WP_013353393.1 hotdog fold thioesterase -
  VXF94_RS16115 (VXF94_16115) mnhG 3129667..3130041 (-) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  VXF94_RS16120 (VXF94_16120) - 3130025..3130309 (-) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  VXF94_RS16125 (VXF94_16125) - 3130309..3130785 (-) 477 WP_013353390.1 Na+/H+ antiporter subunit E -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33461.48 Da        Isoelectric Point: 5.9224

>NTDB_id=845628 VXF94_RS16090 WP_013353397.1 3125098..3125973(+) (comQ) [Bacillus amyloliquefaciens strain Fad 108]
MCLDAETIKGKMKEIVGDKVDNLHLEETLLTFINEKKHFSFGVLAFQHYVAFKGTHSSEITLLAAGIELLILAFDIFDDI
EDEDNFNKAWMQTDHAISLNAATSLYSISLQAICELESNIDFSRLAIKYALNAMQGQHNDLRNFPETEEECLHMIKQKSG
SLTAMSAVLGAMLASGEFNATIENYSYKIGVIKQIENDYYGLFDKSRSDIKKKKRTLINLFLNRQFNSASKKVLNMMNSK
NSYYSLISDRNYFEELLCKAGVRQYVLMLIKIYENEIYNEMEKLNIRIKLW

Nucleotide


Download         Length: 876 bp        

>NTDB_id=845628 VXF94_RS16090 WP_013353397.1 3125098..3125973(+) (comQ) [Bacillus amyloliquefaciens strain Fad 108]
ATGTGTTTAGATGCCGAAACGATTAAAGGGAAGATGAAGGAAATTGTTGGGGATAAAGTCGATAATCTACATTTAGAAGA
GACTCTTTTGACCTTCATTAATGAAAAGAAGCACTTTTCATTCGGTGTCCTTGCTTTCCAGCATTATGTTGCTTTTAAGG
GTACACATTCCTCGGAAATCACACTACTGGCCGCTGGAATTGAACTTTTAATTTTAGCTTTTGATATTTTTGACGATATT
GAAGATGAAGATAACTTTAATAAGGCATGGATGCAAACTGACCATGCTATATCCCTGAATGCGGCTACTTCTCTGTATTC
AATAAGCCTGCAAGCCATTTGTGAGCTTGAATCAAACATCGATTTTTCAAGACTTGCAATAAAATATGCCCTAAATGCAA
TGCAAGGTCAGCATAATGATCTAAGAAATTTCCCGGAGACTGAAGAAGAGTGTTTACATATGATAAAACAGAAATCAGGA
TCGTTAACTGCAATGTCAGCTGTTTTAGGGGCGATGCTTGCAAGTGGTGAATTTAACGCAACAATTGAGAATTATTCTTA
TAAAATTGGCGTTATTAAACAAATTGAAAATGACTATTATGGTTTATTTGATAAAAGCCGTAGTGATATAAAGAAGAAGA
AAAGAACTTTGATAAACTTGTTTTTAAATCGTCAGTTTAATAGTGCCTCAAAAAAAGTTTTAAATATGATGAATTCTAAA
AACAGCTATTACTCTCTCATATCGGACAGAAATTATTTTGAAGAATTGCTGTGTAAAGCAGGAGTCAGACAATATGTTTT
AATGTTAATTAAAATATATGAAAATGAAATTTATAACGAAATGGAAAAGTTGAACATAAGAATTAAACTATGGTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(44-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

46.182

94.502

0.436