Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   VXF94_RS14900 Genome accession   NZ_CP143956
Coordinates   2906253..2908568 (+) Length   771 a.a.
NCBI ID   WP_014472263.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2901253..2913568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS14880 (VXF94_14880) - 2903339..2904010 (+) 672 WP_014472265.1 DsbA family protein -
  VXF94_RS14885 (VXF94_14885) - 2904000..2904419 (+) 420 WP_014471015.1 disulfide oxidoreductase -
  VXF94_RS14890 (VXF94_14890) - 2904453..2905253 (-) 801 WP_014471014.1 zinc-dependent metalloprotease -
  VXF94_RS14895 (VXF94_14895) - 2905476..2906084 (+) 609 WP_014472264.1 trimeric intracellular cation channel family protein -
  VXF94_RS14900 (VXF94_14900) helD 2906253..2908568 (+) 2316 WP_014472263.1 RNA polymerase recycling motor HelD Machinery gene
  VXF94_RS14905 (VXF94_14905) - 2908743..2910551 (+) 1809 WP_014471011.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  VXF94_RS14910 (VXF94_14910) cysI 2910579..2912294 (+) 1716 WP_014471010.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88292.38 Da        Isoelectric Point: 6.3000

>NTDB_id=845622 VXF94_RS14900 WP_014472263.1 2906253..2908568(+) (helD) [Bacillus amyloliquefaciens strain Fad 108]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWNDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNDQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSENSGRHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWGSYETPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
NIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRLL
RADTEKARQEQLTETIRELRQKGWETIAVICKTAAEAKKVFQAVSVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYNSQHDRKLLYTACTRAMHHLTVLSPGVTSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=845622 VXF94_RS14900 WP_014472263.1 2906253..2908568(+) (helD) [Bacillus amyloliquefaciens strain Fad 108]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGCGAAAAACGTTCTGGAATGATGTCACCGTGA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCCTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGACGAAAACAATGATCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTATTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGAAGAA
ACCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGAAAATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATTC
AAAAAGAACAAAATGAAATCATCCGGGATGAAAAAAGTAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGGGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGACGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTT
GCGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCATATGAAACGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCATATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AACATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATCACGGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAACGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGGTCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTCGATGACGGTGATGACATTGAGCCTTTTAACCGGAACGGAGAAAAACCGCGTCTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGCGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTTGCTGACGCCTCTGTTACCCAGTACAATAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCTCCCGGAGTAACTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.104

99.87

0.66