Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   VXF94_RS11650 Genome accession   NZ_CP143956
Coordinates   2282693..2283382 (+) Length   229 a.a.
NCBI ID   WP_014472386.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2277693..2288382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS11630 (VXF94_11630) - 2278858..2279892 (+) 1035 WP_013354156.1 Gfo/Idh/MocA family protein -
  VXF94_RS11635 (VXF94_11635) - 2279912..2280781 (+) 870 WP_013354155.1 sugar phosphate isomerase/epimerase family protein -
  VXF94_RS11640 (VXF94_11640) iolI 2280868..2281710 (+) 843 WP_014472387.1 2-keto-myo-inositol isomerase -
  VXF94_RS11645 (VXF94_11645) fba 2281713..2282585 (+) 873 WP_013354153.1 class II fructose-1,6-bisphosphate aldolase -
  VXF94_RS11650 (VXF94_11650) braR 2282693..2283382 (+) 690 WP_014472386.1 two-component system response regulator YxdJ Regulator
  VXF94_RS11655 (VXF94_11655) yxdK 2283379..2284356 (+) 978 WP_013354151.1 two-component system sensor histidine kinase YxdK -
  VXF94_RS11660 (VXF94_11660) yxdL 2284501..2285274 (+) 774 WP_013354150.1 ABC transporter ATP-binding protein YxdL -
  VXF94_RS11665 (VXF94_11665) yxdM 2285249..2287117 (+) 1869 WP_013354149.1 ABC transporter permease YxdM -
  VXF94_RS11670 (VXF94_11670) - 2287131..2287478 (+) 348 WP_013354148.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26529.30 Da        Isoelectric Point: 4.9502

>NTDB_id=845606 VXF94_RS11650 WP_014472386.1 2282693..2283382(+) (braR) [Bacillus amyloliquefaciens strain Fad 108]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGVGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=845606 VXF94_RS11650 WP_014472386.1 2282693..2283382(+) (braR) [Bacillus amyloliquefaciens strain Fad 108]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCGGCCGCGGATTTTACGGCTGTTCTTGATGTTTTTTTACAGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAAGCCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGGGAGAAAGTGCTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACATGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTAT
CAATTGAATCGGTGCGGGGCGTAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.256

97.38

0.402