Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   VXF94_RS10555 Genome accession   NZ_CP143956
Coordinates   2075667..2075897 (-) Length   76 a.a.
NCBI ID   WP_013350764.1    Uniprot ID   A0A9P1JE37
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070667..2080897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS10545 (VXF94_10545) spoVT 2071390..2071926 (-) 537 WP_013350766.1 stage V sporulation protein T -
  VXF94_RS10550 (VXF94_10550) mfd 2072063..2075596 (-) 3534 WP_013350765.1 transcription-repair coupling factor -
  VXF94_RS10555 (VXF94_10555) subA/fin 2075667..2075897 (-) 231 WP_013350764.1 anti-sigma-F factor Fin family protein Machinery gene
  VXF94_RS10560 (VXF94_10560) pth 2075959..2076525 (-) 567 WP_013350763.1 aminoacyl-tRNA hydrolase -
  VXF94_RS10565 (VXF94_10565) - 2076610..2077218 (-) 609 WP_013350762.1 50S ribosomal protein L25/general stress protein Ctc -
  VXF94_RS10570 (VXF94_10570) - 2077303..2078256 (-) 954 WP_013350761.1 ribose-phosphate diphosphokinase -
  VXF94_RS10575 (VXF94_10575) glmU 2078278..2079648 (-) 1371 WP_013350760.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  VXF94_RS10580 (VXF94_10580) spoVG 2079839..2080132 (-) 294 WP_004264660.1 septation regulator SpoVG -
  VXF94_RS10585 (VXF94_10585) ridA 2080328..2080708 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8893.91 Da        Isoelectric Point: 5.8002

>NTDB_id=845594 VXF94_RS10555 WP_013350764.1 2075667..2075897(-) (subA/fin) [Bacillus amyloliquefaciens strain Fad 108]
MALHYFCRHCGIKVGSLEYTTVPTQSLGFQHLTNEERNDMISYKDNGDLHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=845594 VXF94_RS10555 WP_013350764.1 2075667..2075897(-) (subA/fin) [Bacillus amyloliquefaciens strain Fad 108]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGTATTAAGGTAGGGAGCCTGGAATATACGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATCTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGGAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JE37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

84.211

100

0.842