Detailed information NTG0845588

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VXF94_RS09395
• Genome accession: NZ_CP143956
• Coordinates: 1865502..1866623 (-)
• Length: 373 a.a.
• NCBI ID: WP_013350919.1
• Uniprot ID: A0A9P1NGF1
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1860502..1871623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS09370 (VXF94_09370)	-	1860653..1861612 (-)	960	WP_013350924.1	metal ABC transporter substrate-binding protein	-
VXF94_RS09375 (VXF94_09375)	-	1861821..1862366 (+)	546	WP_013350923.1	PadR family transcriptional regulator	-
VXF94_RS09380 (VXF94_09380)	-	1862367..1862861 (+)	495	WP_013350922.1	DUF4188 domain-containing protein	-
VXF94_RS09385 (VXF94_09385)	-	1862846..1864525 (-)	1680	WP_013350921.1	glycoside hydrolase family 13 protein	-
VXF94_RS09390 (VXF94_09390)	-	1864609..1865388 (-)	780	WP_013350920.1	glucose 1-dehydrogenase	-
VXF94_RS09395 (VXF94_09395)	rapF	1865502..1866623 (-)	1122	WP_013350919.1	tetratricopeptide repeat protein	Regulator
VXF94_RS09400 (VXF94_09400)	-	1866733..1867236 (+)	504	WP_014469700.1	M15 family metallopeptidase	-
VXF94_RS09405 (VXF94_09405)	-	1867233..1868591 (-)	1359	WP_014469699.1	YcdB/YcdC domain-containing protein	-
VXF94_RS09410 (VXF94_09410)	-	1868793..1870190 (-)	1398	WP_014469698.1	YcdB/YcdC domain-containing protein	-
VXF94_RS09415 (VXF94_09415)	-	1870308..1871303 (+)	996	WP_013350915.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44347.46 Da
• Isoelectric Point: 5.0035

>NTDB_id=845588 VXF94_RS09395 WP_013350919.1 1865502..1866623(-) (rapF) [Bacillus amyloliquefaciens strain Fad 108]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=845588 VXF94_RS09395 WP_013350919.1 1865502..1866623(-) (rapF) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTAGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAACCTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCACTATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTATGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATTAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAGCTGTTGGCCGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

3D structure

• AlphaFold DB: A0A9P1NGF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402