Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   VXF94_RS08715 Genome accession   NZ_CP143956
Coordinates   1711218..1711652 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706218..1716652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS08700 (VXF94_08700) - 1706817..1707665 (-) 849 WP_013351052.1 diguanylate cyclase domain-containing protein -
  VXF94_RS08705 (VXF94_08705) - 1707646..1708731 (-) 1086 WP_013351051.1 hypothetical protein -
  VXF94_RS08710 (VXF94_08710) - 1708967..1711153 (-) 2187 WP_014471442.1 DNA topoisomerase III -
  VXF94_RS08715 (VXF94_08715) lrpC 1711218..1711652 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  VXF94_RS08720 (VXF94_08720) - 1711826..1712116 (+) 291 WP_014471441.1 DUF3817 domain-containing protein -
  VXF94_RS08725 (VXF94_08725) - 1712157..1712966 (-) 810 WP_013351047.1 lipid II flippase Amj family protein -
  VXF94_RS08730 (VXF94_08730) - 1713466..1713888 (-) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  VXF94_RS08735 (VXF94_08735) - 1713895..1714518 (-) 624 WP_013351045.1 GNAT family N-acetyltransferase -
  VXF94_RS08740 (VXF94_08740) - 1714606..1715109 (-) 504 WP_013351044.1 D-lyxose/D-mannose family sugar isomerase -
  VXF94_RS08745 (VXF94_08745) - 1715122..1715984 (-) 863 Protein_1715 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=845579 VXF94_RS08715 WP_003156263.1 1711218..1711652(-) (lrpC) [Bacillus amyloliquefaciens strain Fad 108]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=845579 VXF94_RS08715 WP_003156263.1 1711218..1711652(-) (lrpC) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGAAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGCATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799