Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VXF94_RS05560 Genome accession   NZ_CP143956
Coordinates   1123443..1124186 (-) Length   247 a.a.
NCBI ID   WP_013351712.1    Uniprot ID   A0A9P1JFT5
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118443..1129186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS05540 (VXF94_05540) - 1118814..1120198 (+) 1385 Protein_1107 hypothetical protein -
  VXF94_RS05545 (VXF94_05545) - 1120326..1121453 (+) 1128 WP_373419137.1 amidohydrolase -
  VXF94_RS05550 (VXF94_05550) - 1121476..1122180 (-) 705 WP_013351714.1 EcsC family protein -
  VXF94_RS05555 (VXF94_05555) - 1122224..1123450 (-) 1227 WP_013351713.1 ABC transporter permease -
  VXF94_RS05560 (VXF94_05560) pptA 1123443..1124186 (-) 744 WP_013351712.1 ABC transporter ATP-binding protein Regulator
  VXF94_RS05565 (VXF94_05565) - 1124677..1125114 (+) 438 WP_007409220.1 HIT family protein -
  VXF94_RS05570 (VXF94_05570) serC 1125251..1126330 (+) 1080 WP_013351711.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  VXF94_RS05575 (VXF94_05575) - 1126451..1126969 (+) 519 WP_013351710.1 tryptophan transporter -
  VXF94_RS05580 (VXF94_05580) - 1127027..1127218 (-) 192 WP_007409223.1 hypothetical protein -
  VXF94_RS05585 (VXF94_05585) - 1127335..1127691 (+) 357 WP_013351708.1 YtxH domain-containing protein -
  VXF94_RS05590 (VXF94_05590) - 1127871..1128482 (+) 612 WP_013351707.1 HTH-type transcriptional regulator Hpr -
  VXF94_RS05595 (VXF94_05595) - 1128479..1128820 (-) 342 WP_003155243.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27766.18 Da        Isoelectric Point: 5.9140

>NTDB_id=845569 VXF94_RS05560 WP_013351712.1 1123443..1124186(-) (pptA) [Bacillus amyloliquefaciens strain Fad 108]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSTVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMRDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=845569 VXF94_RS05560 WP_013351712.1 1123443..1124186(-) (pptA) [Bacillus amyloliquefaciens strain Fad 108]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTTTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAAATCGTCGGGCTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGTTTAATGG
ACCCGCATAAAGGCTCAATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGTTCGCAATTTACGTAC
ATTCCCGAAACACCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATTTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTTTGAAGGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAGCAGAAAGTCATGATCATGTGCGCATTTCTCGCAGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGGCTTGACCCGCTTGCGATCAATGCTTTATTAGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAACCGT
CCTGATGTCAACGCATATACTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATCATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGAGAGACGCCGCTCTTGATGACTTGTATATTGAATTGACA
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JFT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.067

96.761

0.543