Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VXF94_RS04385 Genome accession   NZ_CP143956
Coordinates   904734..905870 (-) Length   378 a.a.
NCBI ID   WP_088030497.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 899734..910870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS04345 (VXF94_04345) - 899980..900807 (-) 828 WP_014470504.1 hypothetical protein -
  VXF94_RS04350 (VXF94_04350) - 900797..900976 (-) 180 WP_013351935.1 hypothetical protein -
  VXF94_RS04355 (VXF94_04355) xre 901167..901505 (+) 339 WP_013351934.1 HTH-type transcriptional regulator Xre -
  VXF94_RS04360 (VXF94_04360) - 901653..902243 (+) 591 WP_013351933.1 ImmA/IrrE family metallo-endopeptidase -
  VXF94_RS04365 (VXF94_04365) - 902386..902988 (-) 603 WP_013351932.1 poly-gamma-glutamate hydrolase family protein -
  VXF94_RS04370 (VXF94_04370) - 903098..903475 (+) 378 WP_013351931.1 PH domain-containing protein -
  VXF94_RS04375 (VXF94_04375) - 903513..904466 (-) 954 WP_013351930.1 N-acetylmuramoyl-L-alanine amidase -
  VXF94_RS04380 (VXF94_04380) - 904610..904744 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  VXF94_RS04385 (VXF94_04385) rapC 904734..905870 (-) 1137 WP_088030497.1 tetratricopeptide repeat protein Regulator
  VXF94_RS04390 (VXF94_04390) - 906075..906542 (+) 468 WP_013351928.1 DinB family protein -
  VXF94_RS04395 (VXF94_04395) - 906686..907450 (+) 765 WP_013351927.1 sulfite exporter TauE/SafE family protein -
  VXF94_RS04400 (VXF94_04400) - 907618..907809 (-) 192 WP_014470507.1 hypothetical protein -
  VXF94_RS04405 (VXF94_04405) - 907948..908085 (-) 138 WP_308727123.1 ATP-binding cassette domain-containing protein -
  VXF94_RS04410 (VXF94_04410) - 908236..909588 (-) 1353 WP_014470508.1 sensor histidine kinase -
  VXF94_RS04415 (VXF94_04415) - 909585..910256 (-) 672 WP_013351925.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45044.33 Da        Isoelectric Point: 5.0536

>NTDB_id=845555 VXF94_RS04385 WP_088030497.1 904734..905870(-) (rapC) [Bacillus amyloliquefaciens strain Fad 108]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=845555 VXF94_RS04385 WP_088030497.1 904734..905870(-) (rapC) [Bacillus amyloliquefaciens strain Fad 108]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCTGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTTACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426