Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JQN53_RS11030 Genome accession   NZ_AP024301
Coordinates   2036482..2036790 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031482..2041790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN53_RS11000 (TthHB5002_21850) - 2032563..2033027 (+) 465 WP_203971375.1 hypothetical protein -
  JQN53_RS11005 (TthHB5002_21860) pfkA 2033004..2033972 (-) 969 WP_011173968.1 6-phosphofructokinase -
  JQN53_RS11010 (TthHB5002_21870) rsmI 2033969..2034763 (-) 795 WP_203971377.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JQN53_RS11015 (TthHB5002_21880) - 2034765..2035259 (-) 495 WP_011173970.1 hypothetical protein -
  JQN53_RS11020 (TthHB5002_21890) - 2035323..2035850 (-) 528 WP_011173971.1 inorganic diphosphatase -
  JQN53_RS11025 (TthHB5002_21900) - 2035883..2036509 (+) 627 WP_011173972.1 YcxB family protein -
  JQN53_RS11030 (TthHB5002_21910) comEA 2036482..2036790 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  JQN53_RS11035 (TthHB5002_21920) comA/comEC 2036787..2038820 (+) 2034 WP_203971379.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JQN53_RS11040 (TthHB5002_21930) - 2038808..2039617 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein -
  JQN53_RS11045 (TthHB5002_21940) soj 2039601..2040350 (-) 750 WP_203971381.1 chromosome-partitioning ATPase Soj -
  JQN53_RS11050 (TthHB5002_21950) rsmG 2040344..2041093 (-) 750 WP_203971383.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=84555 JQN53_RS11030 WP_024119555.1 2036482..2036790(+) (comEA) [Thermus thermophilus strain HB5002]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=84555 JQN53_RS11030 WP_024119555.1 2036482..2036790(+) (comEA) [Thermus thermophilus strain HB5002]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTCCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422

Multiple sequence alignment