Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VXF94_RS02225 Genome accession   NZ_CP143956
Coordinates   491466..491828 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 486466..496828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS02200 (VXF94_02200) flhB 487991..489070 (-) 1080 WP_013352272.1 flagellar biosynthesis protein FlhB -
  VXF94_RS02205 (VXF94_02205) fliR 489070..489849 (-) 780 WP_013352271.1 flagellar biosynthetic protein FliR -
  VXF94_RS02210 (VXF94_02210) fliQ 489856..490125 (-) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  VXF94_RS02215 (VXF94_02215) fliP 490140..490805 (-) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  VXF94_RS02220 (VXF94_02220) fliZ 490798..491451 (-) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  VXF94_RS02225 (VXF94_02225) pilH 491466..491828 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  VXF94_RS02230 (VXF94_02230) fliY 491855..492988 (-) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  VXF94_RS02235 (VXF94_02235) fliM 492978..493976 (-) 999 WP_013352266.1 flagellar motor switch protein FliM -
  VXF94_RS02240 (VXF94_02240) fliL 494010..494429 (-) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  VXF94_RS02245 (VXF94_02245) - 494426..494641 (-) 216 WP_013352264.1 flagellar FlbD family protein -
  VXF94_RS02250 (VXF94_02250) flgG 494681..495457 (-) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  VXF94_RS02255 (VXF94_02255) flgD 495482..495913 (-) 432 WP_013352262.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=845539 VXF94_RS02225 WP_003154238.1 491466..491828(-) (pilH) [Bacillus amyloliquefaciens strain Fad 108]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=845539 VXF94_RS02225 WP_003154238.1 491466..491828(-) (pilH) [Bacillus amyloliquefaciens strain Fad 108]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383