Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   QSG87_RS01925 Genome accession   NZ_CP127923
Coordinates   378224..380446 (-) Length   740 a.a.
NCBI ID   WP_317023924.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373224..385446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS01900 (QSG87_01900) - 373455..373916 (-) 462 WP_087550437.1 DUF2147 domain-containing protein -
  QSG87_RS01905 (QSG87_01905) - 374115..374570 (-) 456 WP_087550438.1 DUF2147 domain-containing protein -
  QSG87_RS01910 (QSG87_01910) - 374816..375253 (-) 438 WP_087550439.1 DUF2147 domain-containing protein -
  QSG87_RS01915 (QSG87_01915) hslO 375425..376300 (-) 876 WP_317023922.1 Hsp33 family molecular chaperone HslO -
  QSG87_RS01920 (QSG87_01920) - 376350..378191 (-) 1842 WP_317023923.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  QSG87_RS01925 (QSG87_01925) priA 378224..380446 (-) 2223 WP_317023924.1 primosomal protein N' Machinery gene
  QSG87_RS01930 (QSG87_01930) gspF 380597..381802 (+) 1206 WP_087512663.1 type II secretion system inner membrane protein GspF -
  QSG87_RS01935 (QSG87_01935) gspG 381852..382289 (+) 438 WP_087512664.1 type II secretion system major pseudopilin GspG -
  QSG87_RS01940 (QSG87_01940) - 382846..383181 (+) 336 WP_317023925.1 hypothetical protein -
  QSG87_RS01945 (QSG87_01945) - 383225..383659 (-) 435 WP_394357240.1 GFA family protein -
  QSG87_RS01950 (QSG87_01950) lnt 383852..385408 (-) 1557 WP_317023926.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83679.49 Da        Isoelectric Point: 8.5545

>NTDB_id=845237 QSG87_RS01925 WP_317023924.1 378224..380446(-) (priA) [Acinetobacter chinensis strain SAAc573]
MPDLTSASAPVFRIRVAVPVYLYDCFDYMLSEQDYQKAQPGARVLVSFGRQNLTGIVTEKIAPDAPLSSEFKLKYITELL
DDEPLLDTQTLNLLTWSAQYYQFPIGEVMHTALPALLRQGKPYNLLARMWKLLDEHADARLKRSERQQEAYKILKLHPSG
TAENILNLAGVETATLKALEKKGICECVLEVQNFSPQAVSLAQMPLTANEDQKKAVQGILKAQKKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCDIAMLHSGLNDSRRLQAWQAAQTGKASIILGTRSAIFTPL
PRLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLQNCPVILGSATPSIDSYALVDQGKMTVLELNQRAGSAQMPKIHI
LDLKIAQKEHGISKILLAEMKKRLDKKEQVLVFLNRRGYAPVLICESCAWQARCPHCDANFTVHYQPYSHLHCHHCGTIH
RLPNHCPACQHTELKSIGMGTAKVEESLNSLFPDHEVIRVDRDSTSRVGSWQKIYDKIHKSEPVILLGTQMLAKGHHFPY
VTLVAVLDIDAGLLSVDFRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPDHPLLLTLVNENYRAFAQQTLTERKNALL
PPYRYAALIRCESSSQQQNQDFLQEHAGLLRQRSDLNADIWGPIPAPMERKAGRWQAHMVLLSQDRARLHYHMRSWWQNM
LHQKPSTMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=845237 QSG87_RS01925 WP_317023924.1 378224..380446(-) (priA) [Acinetobacter chinensis strain SAAc573]
ATGCCAGACCTAACTTCCGCCTCTGCTCCAGTTTTTCGCATTCGGGTTGCTGTACCAGTTTACCTGTATGACTGTTTTGA
CTATATGCTCAGTGAACAGGACTATCAGAAAGCCCAGCCAGGTGCCAGGGTGCTTGTGTCATTTGGAAGACAGAATCTGA
CGGGGATTGTGACTGAAAAAATTGCGCCCGATGCTCCACTCAGTTCAGAGTTTAAACTGAAATACATTACTGAACTGCTG
GATGATGAACCACTGCTGGATACTCAGACCTTAAATTTACTGACATGGTCGGCACAGTACTATCAGTTTCCCATCGGTGA
GGTCATGCACACTGCATTACCTGCACTGCTGCGCCAGGGTAAGCCCTATAATCTGCTCGCCAGGATGTGGAAACTGCTGG
ATGAACATGCAGATGCCCGTCTGAAACGCTCTGAAAGACAGCAGGAAGCCTATAAGATACTTAAACTGCACCCGTCTGGA
ACAGCAGAAAATATTCTGAATCTGGCAGGCGTTGAAACTGCCACACTCAAAGCCCTGGAAAAAAAAGGCATCTGTGAATG
TGTACTGGAAGTACAGAATTTCAGCCCTCAGGCTGTCAGCCTGGCTCAGATGCCGCTGACTGCCAACGAAGATCAGAAAA
AAGCCGTTCAGGGTATTCTGAAAGCACAAAAAAAATATCAGGCATTTCTGCTCGATGGTTTAACAGGCAGCGGTAAAACT
GAAGTGTATCTTCAGGTAATGCAGGAAGTACTGAAACAGGGTAAACAGGTGCTGGTACTGGTACCTGAAATCGGTCTGAC
ACCTCAGACCATCAGCCGTTTTCAGTCGCGTTTTCATTGTGATATTGCCATGCTGCATTCGGGTCTGAATGATTCCAGAC
GTCTTCAGGCATGGCAGGCAGCTCAGACAGGTAAAGCCTCGATTATACTGGGAACACGTTCAGCCATTTTTACCCCGCTG
CCTCGATTGGGACTGATTGTGCTGGATGAAGAACATGACCTTTCCTTCAAACAGCAGGAAGGTTTCCGCTACCATGCCCG
TGATGTCGCTCTGTATAGAGCACATCTTCAGAACTGCCCTGTGATTCTGGGAAGTGCCACGCCAAGTATAGACAGCTATG
CCCTTGTGGATCAGGGTAAAATGACTGTGCTGGAGCTGAATCAGCGGGCAGGTTCTGCTCAGATGCCTAAAATTCATATT
CTTGATTTAAAAATTGCACAGAAAGAGCATGGCATCAGTAAAATTCTGCTGGCTGAAATGAAAAAACGGCTGGATAAAAA
AGAACAGGTACTGGTGTTTCTGAACCGTCGTGGCTACGCTCCCGTGCTGATCTGTGAAAGCTGTGCCTGGCAAGCCCGAT
GTCCTCACTGTGATGCCAATTTTACGGTTCATTATCAGCCGTATTCACATCTGCACTGCCATCATTGCGGTACCATACAC
CGTTTACCCAATCACTGCCCTGCCTGTCAGCACACTGAGCTGAAATCCATTGGAATGGGCACAGCCAAAGTAGAAGAAAG
TCTGAACAGCTTATTCCCTGATCATGAGGTGATTCGGGTCGATCGGGATTCAACCAGTCGTGTCGGCAGCTGGCAAAAAA
TTTATGACAAAATTCATAAAAGTGAACCCGTCATTTTGCTCGGGACACAGATGCTTGCCAAAGGGCATCATTTCCCTTAT
GTGACCCTGGTTGCTGTACTGGATATAGATGCCGGACTGCTGAGTGTTGATTTTCGTGCGCCTGAACGCACAGCTCAATT
GATTGTTCAGGTTTCAGGACGTGCAGGACGCGGTGAACACAAAGGAGATGTGTATCTTCAGACCCTCAGACCTGATCATC
CTTTACTGCTGACTCTGGTCAATGAAAACTATCGGGCTTTTGCACAGCAGACACTGACCGAACGTAAAAATGCTTTACTG
CCACCCTATCGCTATGCAGCCCTGATCCGCTGTGAATCATCCAGTCAGCAGCAGAATCAGGATTTTTTACAGGAACATGC
AGGGCTGTTACGTCAGCGCAGTGACCTGAATGCAGATATCTGGGGACCCATTCCTGCACCAATGGAACGCAAAGCAGGAC
GCTGGCAGGCACATATGGTACTGTTATCGCAGGATCGGGCACGACTGCATTATCATATGCGCAGCTGGTGGCAGAACATG
CTGCATCAGAAACCCTCCACGATGAAACTGACACTGGATATTGACCCTCAGGAACTCAGCTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(211-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.268

98.919

0.715