Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QSG86_RS11305 Genome accession   NZ_CP127915
Coordinates   2234634..2235017 (+) Length   127 a.a.
NCBI ID   WP_317031589.1    Uniprot ID   A0AA97F093
Organism   Acinetobacter sp. SAAs474     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229634..2240017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG86_RS11275 (QSG86_11265) kdsB 2230424..2231185 (+) 762 WP_317031583.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QSG86_RS11280 (QSG86_11270) - 2231194..2232204 (+) 1011 WP_317031584.1 DNA polymerase III subunit delta' -
  QSG86_RS11285 (QSG86_11275) - 2232188..2232526 (+) 339 WP_317031585.1 PilZ domain-containing protein -
  QSG86_RS11290 (QSG86_11280) - 2232554..2233327 (+) 774 WP_317031586.1 TatD family hydrolase -
  QSG86_RS11295 (QSG86_11285) - 2233374..2233988 (+) 615 WP_317031587.1 TetR/AcrR family transcriptional regulator -
  QSG86_RS11300 (QSG86_11290) - 2233999..2234541 (+) 543 WP_317031588.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSG86_RS11305 (QSG86_11295) xcpV 2234634..2235017 (+) 384 WP_317031589.1 type II secretion system minor pseudopilin GspI Machinery gene
  QSG86_RS11310 (QSG86_11300) - 2235010..2235621 (+) 612 WP_317031590.1 type II secretion system protein GspJ -
  QSG86_RS11315 (QSG86_11305) gspK 2235678..2236649 (+) 972 WP_317031591.1 type II secretion system minor pseudopilin GspK -
  QSG86_RS11320 (QSG86_11310) - 2236782..2237378 (+) 597 WP_317031592.1 6-carboxytetrahydropterin synthase -
  QSG86_RS11325 (QSG86_11315) ung 2237418..2238131 (+) 714 WP_317031593.1 uracil-DNA glycosylase -
  QSG86_RS11330 (QSG86_11320) - 2238128..2239252 (+) 1125 WP_317031594.1 enoyl-CoA hydratase/isomerase family protein -
  QSG86_RS11335 (QSG86_11325) tadA 2239256..2239765 (+) 510 WP_317031595.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14348.62 Da        Isoelectric Point: 8.5376

>NTDB_id=845223 QSG86_RS11305 WP_317031589.1 2234634..2235017(+) (xcpV) [Acinetobacter sp. SAAs474]
MTEKGFTLLEVMVALAIFAIAALVLTQVSMQYSQTIYNAELKTKAQFVAMNEQAVMKIKREWLTGTQSTQTTQQGVLWQI
DKKSQSTISPHIQRIDLQVSVLDSQTKQVLSVITNLVFFNHKVESNE

Nucleotide


Download         Length: 384 bp        

>NTDB_id=845223 QSG86_RS11305 WP_317031589.1 2234634..2235017(+) (xcpV) [Acinetobacter sp. SAAs474]
ATGACAGAAAAAGGGTTTACATTACTAGAGGTGATGGTTGCCTTAGCAATTTTTGCTATAGCAGCTTTAGTATTAACTCA
AGTTTCAATGCAGTATAGTCAAACCATTTATAATGCCGAACTTAAAACCAAGGCACAGTTTGTGGCAATGAATGAACAAG
CTGTGATGAAGATTAAGCGGGAATGGTTGACTGGAACACAATCAACTCAGACGACTCAACAAGGCGTGCTTTGGCAGATT
GATAAAAAAAGTCAGTCGACCATCAGTCCTCATATACAACGGATTGATCTACAGGTCAGTGTATTAGATTCGCAGACAAA
ACAAGTACTAAGTGTGATCACCAATTTAGTGTTTTTTAACCATAAGGTTGAAAGCAATGAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

64

98.425

0.63