Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QSG86_RS03355 Genome accession   NZ_CP127915
Coordinates   502108..502431 (-) Length   107 a.a.
NCBI ID   WP_317030200.1    Uniprot ID   A0AA97F2P2
Organism   Acinetobacter sp. SAAs474     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 497108..507431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG86_RS03335 (QSG86_03325) - 497320..498036 (-) 717 WP_317030196.1 FHA domain-containing protein -
  QSG86_RS03340 (QSG86_03330) gspD 498141..500270 (-) 2130 WP_410487509.1 type II secretion system secretin GspD -
  QSG86_RS03345 (QSG86_03335) - 500362..501195 (-) 834 WP_317030198.1 type II secretion system protein N -
  QSG86_RS03350 (QSG86_03340) gspN 501192..501935 (-) 744 WP_317030199.1 type II secretion system protein N -
  QSG86_RS03355 (QSG86_03345) hns 502108..502431 (-) 324 WP_317030200.1 H-NS histone family protein Regulator
  QSG86_RS03360 (QSG86_03350) - 502574..503002 (-) 429 WP_317030201.1 thioesterase family protein -
  QSG86_RS03365 (QSG86_03355) - 503011..504204 (-) 1194 WP_317030202.1 heme biosynthesis protein HemY -
  QSG86_RS03370 (QSG86_03360) - 504208..505038 (-) 831 WP_317030203.1 hypothetical protein -
  QSG86_RS03375 (QSG86_03365) - 505035..505811 (-) 777 WP_317030204.1 uroporphyrinogen-III synthase -
  QSG86_RS03380 (QSG86_03370) hemC 505814..506731 (-) 918 WP_317032657.1 hydroxymethylbilane synthase -
  QSG86_RS03385 (QSG86_03375) - 506835..507191 (-) 357 Protein_431 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12108.79 Da        Isoelectric Point: 5.3224

>NTDB_id=845204 QSG86_RS03355 WP_317030200.1 502108..502431(-) (hns) [Acinetobacter sp. SAAs474]
MPDISNLSVEELKRLQLEAEALIASKKDQAIEDAYHQILETAESVGLTVEEILEFGASKRKKGSRKAVEPRYRSKENPAE
TWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=845204 QSG86_RS03355 WP_317030200.1 502108..502431(-) (hns) [Acinetobacter sp. SAAs474]
ATGCCAGATATTAGTAATTTATCTGTCGAAGAGTTAAAAAGATTACAACTTGAAGCTGAGGCTTTAATTGCATCTAAAAA
AGATCAGGCGATTGAAGATGCATATCATCAAATTTTAGAGACTGCAGAAAGCGTAGGTTTAACTGTTGAAGAAATTTTAG
AGTTTGGTGCATCTAAACGTAAAAAAGGTTCGCGTAAAGCAGTTGAACCAAGATATCGTAGTAAAGAGAATCCTGCAGAA
ACTTGGACAGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAATTGGAAAAAGGTGCAAAATTAGAAGACTTTTTGAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.075

99.065

0.813