Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QSG85_RS16400 Genome accession   NZ_CP127906
Coordinates   3519212..3519538 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain SAAb472     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3514212..3524538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS16380 (QSG85_16385) - 3514312..3514941 (-) 630 WP_280034021.1 FHA domain-containing protein -
  QSG85_RS16385 (QSG85_16390) gspD 3514982..3517258 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  QSG85_RS16390 (QSG85_16395) - 3517300..3518136 (-) 837 WP_000870031.1 type II secretion system protein N -
  QSG85_RS16395 (QSG85_16400) gspN 3518136..3518879 (-) 744 WP_000730342.1 type II secretion system protein N -
  QSG85_RS16400 (QSG85_16405) hns 3519212..3519538 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  QSG85_RS16405 (QSG85_16410) - 3519733..3520173 (-) 441 WP_000661569.1 thioesterase family protein -
  QSG85_RS16410 (QSG85_16415) - 3520181..3521374 (-) 1194 WP_210561261.1 heme biosynthesis protein HemY -
  QSG85_RS16415 (QSG85_16420) - 3521384..3522223 (-) 840 WP_029424458.1 hypothetical protein -
  QSG85_RS16420 (QSG85_16425) - 3522232..3522999 (-) 768 WP_280034020.1 uroporphyrinogen-III synthase -
  QSG85_RS16425 (QSG85_16430) hemC 3523004..3523921 (-) 918 WP_031944408.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=845186 QSG85_RS16400 WP_000801427.1 3519212..3519538(-) (hns) [Acinetobacter baumannii strain SAAb472]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=845186 QSG85_RS16400 WP_000801427.1 3519212..3519538(-) (hns) [Acinetobacter baumannii strain SAAb472]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1