Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   QSG85_RS15235 Genome accession   NZ_CP127906
Coordinates   3266758..3267558 (-) Length   266 a.a.
NCBI ID   WP_196256584.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3261758..3272558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS15215 (QSG85_15220) - 3262823..3263521 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  QSG85_RS15220 (QSG85_15225) hisS 3263550..3264842 (-) 1293 WP_196085912.1 histidine--tRNA ligase -
  QSG85_RS15225 (QSG85_15230) ispG 3264839..3265954 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  QSG85_RS15230 (QSG85_15235) - 3265976..3266767 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  QSG85_RS15235 (QSG85_15240) pilF 3266758..3267558 (-) 801 WP_196256584.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  QSG85_RS15240 (QSG85_15245) rlmN 3267573..3268805 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  QSG85_RS15245 (QSG85_15250) ndk 3268928..3269359 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  QSG85_RS15250 (QSG85_15255) iscX 3269473..3269673 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  QSG85_RS15255 (QSG85_15260) - 3269773..3270324 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  QSG85_RS15260 (QSG85_15265) - 3270349..3271647 (-) 1299 WP_085940557.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30114.43 Da        Isoelectric Point: 9.2307

>NTDB_id=845178 QSG85_RS15235 WP_196256584.1 3266758..3267558(-) (pilF) [Acinetobacter baumannii strain SAAb472]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=845178 QSG85_RS15235 WP_196256584.1 3266758..3267558(-) (pilF) [Acinetobacter baumannii strain SAAb472]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAATCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(88-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722