Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   V2195_RS11415 Genome accession   NZ_CP143903
Coordinates   2396591..2397115 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA13_L17_27.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2391591..2402115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2195_RS11400 (V2195_11400) aroB 2392707..2393813 (-) 1107 WP_009314395.1 3-dehydroquinate synthase -
  V2195_RS11405 (V2195_11405) aroK 2393863..2394381 (-) 519 WP_003095833.1 shikimate kinase AroK -
  V2195_RS11410 (V2195_11410) pilQ 2394393..2396537 (-) 2145 WP_033995309.1 type 4a pilus secretin PilQ Machinery gene
  V2195_RS11415 (V2195_11415) comL/pilP 2396591..2397115 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  V2195_RS11420 (V2195_11420) pilO 2397112..2397735 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  V2195_RS11425 (V2195_11425) pilN 2397732..2398328 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  V2195_RS11430 (V2195_11430) pilM 2398328..2399392 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  V2195_RS11435 (V2195_11435) - 2399577..2402048 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=845164 V2195_RS11415 WP_003095836.1 2396591..2397115(-) (comL/pilP) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=845164 V2195_RS11415 WP_003095836.1 2396591..2397115(-) (comL/pilP) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362