Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QSG85_RS02305 Genome accession   NZ_CP127906
Coordinates   477418..478302 (+) Length   294 a.a.
NCBI ID   WP_280033722.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472418..483302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS02280 (QSG85_02280) - 472817..474064 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  QSG85_RS02285 (QSG85_02285) wrbA 474351..474944 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  QSG85_RS02290 (QSG85_02290) - 474997..475572 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  QSG85_RS02295 (QSG85_02295) - 475645..476358 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  QSG85_RS02300 (QSG85_02300) - 476516..477187 (-) 672 WP_280033723.1 hypothetical protein -
  QSG85_RS02305 (QSG85_02305) tonB2 477418..478302 (+) 885 WP_280033722.1 energy transducer TonB Machinery gene
  QSG85_RS02310 (QSG85_02310) ybeY 478392..478868 (-) 477 WP_280033721.1 rRNA maturation RNase YbeY -
  QSG85_RS02315 (QSG85_02315) - 478878..479966 (-) 1089 WP_000122983.1 PhoH family protein -
  QSG85_RS02320 (QSG85_02320) miaB 480004..481455 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33678.59 Da        Isoelectric Point: 9.0935

>NTDB_id=845163 QSG85_RS02305 WP_280033722.1 477418..478302(+) (tonB2) [Acinetobacter baumannii strain SAAb472]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKVSVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=845163 QSG85_RS02305 WP_280033722.1 477418..478302(+) (tonB2) [Acinetobacter baumannii strain SAAb472]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGTATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993