Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QSG84_RS13400 Genome accession   NZ_CP127893
Coordinates   2857795..2858679 (+) Length   294 a.a.
NCBI ID   WP_317030845.1    Uniprot ID   -
Organism   Acinetobacter sp. SAAs470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2852795..2863679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS13375 (QSG84_13370) - 2852979..2854277 (+) 1299 WP_317030841.1 FAD-binding oxidoreductase -
  QSG84_RS13380 (QSG84_13375) - 2854278..2855033 (+) 756 WP_317030842.1 SDR family NAD(P)-dependent oxidoreductase -
  QSG84_RS13385 (QSG84_13380) - 2855138..2855509 (-) 372 WP_317030843.1 hypothetical protein -
  QSG84_RS13390 (QSG84_13385) - 2855666..2856244 (-) 579 WP_317032696.1 xanthine phosphoribosyltransferase -
  QSG84_RS13395 (QSG84_13390) - 2856627..2857328 (-) 702 WP_317030844.1 hypothetical protein -
  QSG84_RS13400 (QSG84_13395) tonB2 2857795..2858679 (+) 885 WP_317030845.1 TonB family protein Machinery gene
  QSG84_RS13405 (QSG84_13400) ybeY 2858829..2859311 (-) 483 WP_317030846.1 rRNA maturation RNase YbeY -
  QSG84_RS13410 (QSG84_13405) - 2859338..2860420 (-) 1083 WP_317030847.1 PhoH family protein -
  QSG84_RS13415 (QSG84_13410) miaB 2860461..2861918 (-) 1458 WP_317030848.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 34046.92 Da        Isoelectric Point: 9.5271

>NTDB_id=845145 QSG84_RS13400 WP_317030845.1 2857795..2858679(+) (tonB2) [Acinetobacter sp. SAAs470]
MLKKNAFNPPYFHQCWWNDWVFLCALLAAIVLHGTLVFIDFAEVPAEKNTLKEMALAMNISSETPRDADFLAQANQLGSG
KFREKHRISTPIIQTLAMEQHSDHHLQQQQNSRLFFNRNDTQARILLTIVNSRSVFKQQQKLLHALQQQFQAKAAMIATI
EAQYLQHQHHFSRQQKIKTLDSIQAKQDVSAHYLEQFREKVEFYGNHDYSTQATLQHLAGEVRLLVVLNHYGEIRTIRLI
ESSGSSILDEAAKNSVRKAAPFGLFDKKMKNINELRIIRTWRFNPVETEINIDP

Nucleotide


Download         Length: 885 bp        

>NTDB_id=845145 QSG84_RS13400 WP_317030845.1 2857795..2858679(+) (tonB2) [Acinetobacter sp. SAAs470]
ATGTTAAAAAAAAATGCTTTTAATCCTCCATATTTTCATCAATGTTGGTGGAATGACTGGGTTTTTTTATGTGCACTATT
GGCTGCTATAGTATTGCATGGCACATTAGTATTTATTGATTTTGCTGAAGTGCCGGCAGAGAAAAATACGCTAAAAGAAA
TGGCATTGGCGATGAATATCTCATCTGAGACACCACGAGATGCTGATTTTTTAGCACAAGCCAATCAATTGGGTTCTGGT
AAGTTTCGTGAAAAACATCGGATATCCACCCCCATCATACAGACTTTGGCAATGGAGCAGCATTCAGATCATCATCTACA
ACAACAGCAAAATTCTCGATTATTTTTTAACAGAAATGATACCCAAGCACGAATATTATTGACCATTGTAAATTCACGAT
CAGTATTCAAACAGCAACAAAAACTATTACATGCATTACAACAACAATTTCAGGCCAAAGCAGCAATGATTGCTACCATT
GAAGCTCAATATTTACAACATCAGCATCATTTTAGTCGGCAGCAAAAAATTAAAACGCTGGATAGTATTCAGGCAAAGCA
GGATGTTTCAGCACATTATCTTGAACAATTTCGAGAAAAAGTTGAATTTTATGGCAATCATGACTATTCAACTCAAGCAA
CATTACAGCATCTTGCAGGAGAAGTTCGTTTATTGGTGGTTTTAAATCATTATGGTGAGATTCGTACGATACGCTTAATT
GAAAGTTCTGGTTCTAGCATTTTAGATGAAGCGGCAAAAAATTCGGTGAGAAAAGCGGCACCTTTTGGTTTGTTTGACAA
AAAAATGAAGAACATCAATGAATTGAGGATTATTCGTACTTGGCGCTTTAATCCAGTAGAAACAGAAATTAATATCGACC
CATGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

50.166

100

0.514