Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R1N_RS08305 Genome accession   NZ_AP024281
Coordinates   1721706..1722332 (+) Length   208 a.a.
NCBI ID   WP_033145121.1    Uniprot ID   A0A263VSI0
Organism   Enterobacter asburiae strain Ent261     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716706..1727332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1N_RS08285 (R1N_16250) - 1717106..1718866 (-) 1761 WP_033145119.1 Lon protease family protein -
  R1N_RS08290 (R1N_16260) matP 1719053..1719505 (+) 453 WP_032658161.1 macrodomain Ter protein MatP -
  R1N_RS08295 (R1N_16270) ompA 1719569..1720624 (-) 1056 WP_023311028.1 porin OmpA -
  R1N_RS08300 (R1N_16280) sulA 1720979..1721488 (-) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  R1N_RS08305 (R1N_16290) sxy/tfoX 1721706..1722332 (+) 627 WP_033145121.1 TfoX/Sxy family DNA transformation protein Regulator
  R1N_RS08310 (R1N_16300) yccS 1722289..1724451 (-) 2163 WP_033145122.1 YccS family putative transporter -
  R1N_RS08315 (R1N_16310) - 1724471..1724917 (-) 447 WP_023311032.1 YccF domain-containing protein -
  R1N_RS08320 (R1N_16320) helD 1725041..1727095 (+) 2055 WP_033145123.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23876.44 Da        Isoelectric Point: 9.4588

>NTDB_id=84514 R1N_RS08305 WP_033145121.1 1721706..1722332(+) (sxy/tfoX) [Enterobacter asburiae strain Ent261]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=84514 R1N_RS08305 WP_033145121.1 1721706..1722332(+) (sxy/tfoX) [Enterobacter asburiae strain Ent261]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGTGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCTGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATCACCAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VSI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment