Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   QSG84_RS12060 Genome accession   NZ_CP127893
Coordinates   2587586..2588230 (+) Length   214 a.a.
NCBI ID   WP_317030617.1    Uniprot ID   A0AA97F018
Organism   Acinetobacter sp. SAAs470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582586..2593230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS12045 (QSG84_12040) - 2583278..2583868 (+) 591 WP_317030614.1 hypothetical protein -
  QSG84_RS12050 (QSG84_12045) ponA 2583848..2586364 (-) 2517 WP_317030615.1 penicillin-binding protein PBP1a -
  QSG84_RS12055 (QSG84_12050) pilM 2586528..2587589 (+) 1062 WP_317030616.1 pilus assembly protein PilM Machinery gene
  QSG84_RS12060 (QSG84_12055) comN 2587586..2588230 (+) 645 WP_317030617.1 PilN domain-containing protein Machinery gene
  QSG84_RS12065 (QSG84_12060) pilO 2588227..2588925 (+) 699 WP_317030618.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG84_RS12070 (QSG84_12065) - 2588918..2589442 (+) 525 WP_317030619.1 pilus assembly protein PilP -
  QSG84_RS12075 (QSG84_12070) pilQ 2589471..2591561 (+) 2091 WP_317030620.1 type IV pilus secretin PilQ -
  QSG84_RS12080 (QSG84_12075) aroK 2591650..2592147 (+) 498 WP_317032679.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24702.66 Da        Isoelectric Point: 6.7367

>NTDB_id=845139 QSG84_RS12060 WP_317030617.1 2587586..2588230(+) (comN) [Acinetobacter sp. SAAs470]
MIKINLLPWRDESRIKRRKEFVMMSALVVIVASMIMMMIAYFYHQRLQDQLHANQTIIRANQALDQQLKSLDGLQSQRQQ
IIERMALIQSLQSQRPIVVRLIDELVRMMPTPLFLTQLTRKDDQLVLIGHADNPNTVAEFLRNLERSPWYRNALMNSFVA
KEKETAQNVQGIVIPVVESGFGDFVVTVDITEPEPQSAMDQVVDRERPSSEVNS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=845139 QSG84_RS12060 WP_317030617.1 2587586..2588230(+) (comN) [Acinetobacter sp. SAAs470]
GTGATTAAAATTAATTTACTGCCTTGGCGAGATGAATCAAGAATTAAACGACGCAAAGAATTTGTCATGATGAGTGCACT
GGTGGTGATTGTCGCGAGCATGATAATGATGATGATTGCTTATTTTTACCATCAACGACTGCAGGATCAATTACATGCTA
ATCAAACCATTATTCGTGCTAATCAGGCTTTAGATCAACAATTAAAGTCATTAGATGGTTTACAAAGTCAGCGTCAGCAA
ATTATTGAGCGTATGGCACTTATTCAAAGTTTACAGAGTCAGCGACCGATTGTCGTAAGGTTGATAGATGAGCTTGTCCG
TATGATGCCAACGCCATTATTTTTGACTCAATTGACACGTAAAGATGATCAGCTTGTCTTGATCGGACATGCGGATAATC
CAAATACTGTTGCTGAATTTTTAAGAAATCTAGAACGCTCCCCTTGGTATCGCAATGCATTGATGAACTCATTTGTAGCG
AAAGAAAAAGAAACAGCGCAAAACGTGCAAGGTATTGTGATTCCGGTTGTGGAATCTGGATTTGGTGATTTTGTTGTTAC
GGTCGATATTACTGAACCTGAGCCACAGTCAGCTATGGATCAAGTTGTTGATCGTGAGCGACCATCATCTGAGGTGAATT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

55.208

89.72

0.495
  pilN Acinetobacter baumannii D1279779

53.125

89.72

0.477