Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QSG83_RS14435 Genome accession   NZ_CP127892
Coordinates   2775329..2775655 (-) Length   108 a.a.
NCBI ID   WP_004975751.1    Uniprot ID   A0A2A5PGU4
Organism   Acinetobacter towneri strain SAAt401     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770329..2780655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS14415 (QSG83_14425) - 2770552..2771202 (-) 651 WP_004975761.1 FHA domain-containing protein -
  QSG83_RS14420 (QSG83_14430) gspD 2771272..2773527 (-) 2256 WP_317028058.1 type II secretion system secretin GspD -
  QSG83_RS14425 (QSG83_14435) - 2773587..2774426 (-) 840 WP_136144169.1 type II secretion system protein N -
  QSG83_RS14430 (QSG83_14440) gspN 2774426..2775166 (-) 741 WP_136144168.1 type II secretion system protein N -
  QSG83_RS14435 (QSG83_14445) hns 2775329..2775655 (-) 327 WP_004975751.1 H-NS family nucleoid-associated regulatory protein Regulator
  QSG83_RS14440 (QSG83_14450) - 2775801..2776232 (-) 432 WP_096901909.1 thioesterase family protein -
  QSG83_RS14445 (QSG83_14455) - 2776242..2777435 (-) 1194 WP_317028059.1 heme biosynthesis protein HemY -
  QSG83_RS14450 (QSG83_14460) - 2777436..2778272 (-) 837 WP_317028060.1 hypothetical protein -
  QSG83_RS14455 (QSG83_14465) - 2778269..2779048 (-) 780 WP_317028061.1 uroporphyrinogen-III synthase -
  QSG83_RS14460 (QSG83_14470) hemC 2779070..2779990 (-) 921 WP_096901970.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12180.06 Da        Isoelectric Point: 9.8659

>NTDB_id=845106 QSG83_RS14435 WP_004975751.1 2775329..2775655(-) (hns) [Acinetobacter towneri strain SAAt401]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=845106 QSG83_RS14435 WP_004975751.1 2775329..2775655(-) (hns) [Acinetobacter towneri strain SAAt401]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PGU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759