Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QSG83_RS13380 Genome accession   NZ_CP127892
Coordinates   2550667..2551524 (-) Length   285 a.a.
NCBI ID   WP_214129012.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2545667..2556524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS13365 (QSG83_13375) miaB 2547361..2548815 (+) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QSG83_RS13370 (QSG83_13380) - 2548855..2549928 (+) 1074 WP_004976193.1 PhoH family protein -
  QSG83_RS13375 (QSG83_13385) ybeY 2549972..2550454 (+) 483 WP_180060587.1 rRNA maturation RNase YbeY -
  QSG83_RS13380 (QSG83_13390) tonB2 2550667..2551524 (-) 858 WP_214129012.1 energy transducer TonB Machinery gene
  QSG83_RS13385 (QSG83_13395) - 2551800..2552474 (+) 675 WP_004976182.1 hypothetical protein -
  QSG83_RS13390 (QSG83_13400) - 2552620..2553333 (+) 714 WP_004976176.1 DUF3108 domain-containing protein -
  QSG83_RS13395 (QSG83_13405) - 2553462..2554037 (+) 576 WP_317028036.1 xanthine phosphoribosyltransferase -
  QSG83_RS13400 (QSG83_13410) - 2554300..2554698 (+) 399 WP_154321055.1 hypothetical protein -
  QSG83_RS13405 (QSG83_13415) - 2554760..2554951 (-) 192 WP_317028037.1 hypothetical protein -
  QSG83_RS13410 (QSG83_13420) wrbA 2555520..2556116 (-) 597 WP_026438329.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32237.58 Da        Isoelectric Point: 6.2940

>NTDB_id=845101 QSG83_RS13380 WP_214129012.1 2550667..2551524(-) (tonB2) [Acinetobacter towneri strain SAAt401]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFVAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=845101 QSG83_RS13380 WP_214129012.1 2550667..2551524(-) (tonB2) [Acinetobacter towneri strain SAAt401]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGTTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.685

97.895

0.702