Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QSG83_RS09260 Genome accession   NZ_CP127892
Coordinates   1700016..1700396 (-) Length   126 a.a.
NCBI ID   WP_178318414.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695016..1705396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS09235 (QSG83_09240) ung 1695686..1696399 (-) 714 WP_004976786.1 uracil-DNA glycosylase -
  QSG83_RS09240 (QSG83_09245) - 1696437..1697033 (-) 597 WP_104851897.1 6-carboxytetrahydropterin synthase -
  QSG83_RS09245 (QSG83_09250) - 1697281..1698371 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  QSG83_RS09250 (QSG83_09255) gspK 1698399..1699382 (-) 984 WP_096901166.1 type II secretion system minor pseudopilin GspK -
  QSG83_RS09255 (QSG83_09260) xcpW 1699396..1700019 (-) 624 WP_178318415.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QSG83_RS09260 (QSG83_09265) xcpV 1700016..1700396 (-) 381 WP_178318414.1 type II secretion system minor pseudopilin GspI Machinery gene
  QSG83_RS09265 (QSG83_09270) - 1700386..1700937 (-) 552 WP_178318413.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSG83_RS09270 (QSG83_09275) - 1700944..1701558 (-) 615 WP_004976797.1 TetR/AcrR family transcriptional regulator -
  QSG83_RS09275 (QSG83_09280) - 1701652..1702425 (-) 774 WP_004976800.1 TatD family hydrolase -
  QSG83_RS09280 (QSG83_09285) - 1702450..1702791 (-) 342 WP_026438361.1 PilZ domain-containing protein -
  QSG83_RS09285 (QSG83_09290) - 1702802..1703791 (-) 990 WP_178318412.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  QSG83_RS09290 (QSG83_09295) kdsB 1703806..1704567 (-) 762 WP_004976805.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13950.92 Da        Isoelectric Point: 5.0181

>NTDB_id=845097 QSG83_RS09260 WP_178318414.1 1700016..1700396(-) (xcpV) [Acinetobacter towneri strain SAAt401]
MKAKGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTNAQFVALNEVALMEMNRQWLSGTESKQVTQQGETWQI
DKSTQPTISPNVQRVDLQISLYNQDTGQVEAGVTSLVFFNAREQQS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=845097 QSG83_RS09260 WP_178318414.1 1700016..1700396(-) (xcpV) [Acinetobacter towneri strain SAAt401]
ATGAAAGCTAAAGGATTTACACTACTTGAAGTTATGGTGGCTTTGGCAATTTTTGCAACAGCAGCTATGGCAATGACCAA
AGTGGCGATGCAATATACCCAATCCACCGCCAATGCAATTTTAAGAACCAATGCACAATTTGTGGCTTTGAATGAAGTGG
CATTGATGGAAATGAATCGTCAATGGTTAAGTGGGACAGAGTCAAAGCAAGTGACACAACAGGGCGAAACATGGCAAATT
GACAAGTCCACACAACCAACCATTAGTCCGAATGTGCAACGTGTCGATCTTCAAATCAGTTTATATAATCAAGACACAGG
ACAAGTTGAAGCAGGAGTGACTTCTTTGGTGTTTTTTAATGCCCGTGAGCAGCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.667

95.238

0.73