Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L6410_RS10995 Genome accession   NZ_AP024276
Coordinates   2196482..2197240 (+) Length   252 a.a.
NCBI ID   WP_024404574.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191482..2202240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS10960 tnpA 2192859..2193323 (-) 465 Protein_2132 IS200/IS605-like element ISSsu4 family transposase -
  L6410_RS10980 (SUT286_21350) - 2193876..2194538 (-) 663 WP_237395533.1 YoaK family protein -
  L6410_RS10985 (SUT286_21360) rlmH 2194566..2195045 (-) 480 WP_160864073.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L6410_RS10990 (SUT286_21370) htrA 2195238..2196419 (+) 1182 WP_237395534.1 S1C family serine protease Regulator
  L6410_RS10995 (SUT286_21380) spo0J 2196482..2197240 (+) 759 WP_024404574.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28943.31 Da        Isoelectric Point: 7.5656

>NTDB_id=84507 L6410_RS10995 WP_024404574.1 2196482..2197240(+) (spo0J) [Streptococcus parasuis strain SUT-286]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPLIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIEKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRQAVETGKITQGHA
RQLVALSEKQQAEWVQKIQEKDISVRQLETILSSKKKKTIRKSDQFVAEEEEKLAKLLGTKVTIQQKKNGSGQLTIQFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=84507 L6410_RS10995 WP_024404574.1 2196482..2197240(+) (spo0J) [Streptococcus parasuis strain SUT-286]
ATGGAAGAACTACACTATCTCAAAATAAAAGACATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCCATTATTGTTCGCAGATCACCGCTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTATCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAAGAGGCTCA
TTCCTACGAAAAGTTGATAGAAAAAGGCTTAACACATGATGAGATTGCCCAAATCATGGGAAAATCACGACCATATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGCAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCGCTATCAGAGAAACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGCGTACGACA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCGACCAATTTGTTGCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGAACCAAGGTAACAATCCAACAAAAGAAAAATGGATCGGGACAACTAACTATTCAATTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-191)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.299

100

0.567

Multiple sequence alignment