Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   V2197_RS03225 Genome accession   NZ_CP143901
Coordinates   663620..663949 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA12_L1_25.22_ST207     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 658620..668949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2197_RS03210 (V2197_03210) uvrB 660007..662019 (-) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene
  V2197_RS03215 (V2197_03215) - 662207..663403 (+) 1197 WP_033996105.1 amino acid aminotransferase -
  V2197_RS03225 (V2197_03225) comEA/comE1 663620..663949 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  V2197_RS03230 (V2197_03230) - 664140..666137 (-) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  V2197_RS03235 (V2197_03235) - 666268..667293 (-) 1026 WP_009313766.1 MraY family glycosyltransferase -
  V2197_RS03240 (V2197_03240) - 667290..668249 (-) 960 WP_073657243.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=845045 V2197_RS03225 WP_003091430.1 663620..663949(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=845045 V2197_RS03225 WP_003091430.1 663620..663949(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385