Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD24_RS19485 Genome accession   NZ_CP127874
Coordinates   3713706..3714080 (+) Length   124 a.a.
NCBI ID   WP_231504569.1    Uniprot ID   -
Organism   Priestia megaterium strain ELP1.24a     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3708706..3719080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD24_RS19465 (QRD24_19465) - 3709043..3709714 (-) 672 WP_028411024.1 response regulator transcription factor -
  QRD24_RS19470 (QRD24_19470) - 3710040..3710858 (+) 819 WP_028411023.1 phytoene/squalene synthase family protein -
  QRD24_RS19475 (QRD24_19475) - 3710894..3712843 (-) 1950 WP_098249082.1 FUSC family protein -
  QRD24_RS19480 (QRD24_19480) - 3713000..3713260 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  QRD24_RS19485 (QRD24_19485) nucA/comI 3713706..3714080 (+) 375 WP_231504569.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD24_RS19490 (QRD24_19490) comJ 3714116..3714523 (+) 408 WP_028411020.1 competence protein ComJ -
  QRD24_RS19495 (QRD24_19495) - 3714626..3715216 (-) 591 WP_253351732.1 CPBP family intramembrane glutamic endopeptidase -
  QRD24_RS19500 (QRD24_19500) helD 3715612..3717930 (-) 2319 WP_286127674.1 RNA polymerase recycling motor HelD -
  QRD24_RS19505 (QRD24_19505) - 3718175..3718300 (-) 126 WP_016765178.1 hypothetical protein -
  QRD24_RS19510 (QRD24_19510) - 3718440..3718958 (-) 519 WP_223272391.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13659.93 Da        Isoelectric Point: 4.2689

>NTDB_id=845027 QRD24_RS19485 WP_231504569.1 3713706..3714080(+) (nucA/comI) [Priestia megaterium strain ELP1.24a]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSAVCTIDREGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=845027 QRD24_RS19485 WP_231504569.1 3713706..3714080(+) (nucA/comI) [Priestia megaterium strain ELP1.24a]
ATGGGACATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCAATTGCCGCTGGGCACTCTGCCGTTTGCACAATTGATCGCGAAG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(31-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.387

95.968

0.637