Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QRD24_RS16370 Genome accession   NZ_CP127874
Coordinates   3193052..3194002 (-) Length   316 a.a.
NCBI ID   WP_116373727.1    Uniprot ID   -
Organism   Priestia megaterium strain ELP1.24a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3188052..3199002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD24_RS16345 (QRD24_16345) - 3188062..3188916 (-) 855 WP_286127535.1 manganese catalase family protein -
  QRD24_RS16350 (QRD24_16350) - 3189107..3189949 (-) 843 WP_286127536.1 manganese catalase family protein -
  QRD24_RS16355 (QRD24_16355) - 3190380..3191336 (-) 957 WP_098248065.1 siderophore ABC transporter substrate-binding protein -
  QRD24_RS16360 (QRD24_16360) - 3191360..3192118 (-) 759 WP_028409263.1 ABC transporter ATP-binding protein -
  QRD24_RS16365 (QRD24_16365) - 3192112..3193059 (-) 948 WP_060746379.1 iron chelate uptake ABC transporter family permease subunit -
  QRD24_RS16370 (QRD24_16370) ceuB 3193052..3194002 (-) 951 WP_116373727.1 ABC transporter permease Machinery gene
  QRD24_RS16375 (QRD24_16375) - 3194407..3195213 (-) 807 WP_060746380.1 cell wall hydrolase -
  QRD24_RS16380 (QRD24_16380) - 3195576..3195830 (+) 255 WP_013057893.1 hypothetical protein -
  QRD24_RS16385 (QRD24_16385) - 3195912..3196076 (-) 165 WP_013057894.1 hypothetical protein -
  QRD24_RS16390 (QRD24_16390) - 3196394..3196738 (-) 345 WP_013057895.1 hypothetical protein -
  QRD24_RS16395 (QRD24_16395) - 3196781..3197812 (-) 1032 WP_060745338.1 zinc-binding dehydrogenase -
  QRD24_RS16400 (QRD24_16400) - 3197818..3198864 (-) 1047 WP_060745337.1 galactitol-1-phosphate 5-dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35071.34 Da        Isoelectric Point: 9.9188

>NTDB_id=845023 QRD24_RS16370 WP_116373727.1 3193052..3194002(-) (ceuB) [Priestia megaterium strain ELP1.24a]
MKFYQLILVFAVLSILSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYFYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=845023 QRD24_RS16370 WP_116373727.1 3193052..3194002(-) (ceuB) [Priestia megaterium strain ELP1.24a]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGATTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTTATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCGCTAGTCGGTTTAATGCTCGGCAGTATCGTAAGTTCCTTAGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAATTGCTTATTTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGTG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTGTCGCTTATTACGTCAATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTGGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATCTCTATTG
GGCTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.649

95.57

0.503