Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   L6410_RS09805 Genome accession   NZ_AP024276
Coordinates   1949026..1949739 (-) Length   237 a.a.
NCBI ID   WP_024391755.1    Uniprot ID   A0A6L8MWM2
Organism   Streptococcus parasuis strain SUT-286     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944026..1954739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS09780 (SUT286_19090) trxA 1944158..1944472 (-) 315 WP_024391759.1 thioredoxin -
  L6410_RS09785 - 1944627..1945401 (-) 775 Protein_1910 GNAT family N-acetyltransferase -
  L6410_RS09790 (SUT286_19120) - 1945425..1947758 (-) 2334 WP_237395417.1 endonuclease MutS2 -
  L6410_RS09795 (SUT286_19130) - 1948106..1948654 (-) 549 WP_024396959.1 CvpA family protein -
  L6410_RS09800 (SUT286_19140) - 1948651..1948968 (-) 318 WP_024391756.1 hypothetical protein -
  L6410_RS09805 (SUT286_19150) treR 1949026..1949739 (-) 714 WP_024391755.1 trehalose operon repressor Regulator
  L6410_RS09810 (SUT286_19160) treP 1949970..1951970 (+) 2001 WP_172038649.1 PTS system trehalose-specific EIIBC component -
  L6410_RS09815 (SUT286_19170) treC 1952049..1953674 (+) 1626 WP_237395418.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27563.54 Da        Isoelectric Point: 6.5135

>NTDB_id=84494 L6410_RS09805 WP_024391755.1 1949026..1949739(-) (treR) [Streptococcus parasuis strain SUT-286]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=84494 L6410_RS09805 WP_024391755.1 1949026..1949739(-) (treR) [Streptococcus parasuis strain SUT-286]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAATTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAGTTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATCGCAAAAGGTTCCATTTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCTTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGTGATACACAACAATTTC
AATATACTGAAAGCAAACATAAAATAGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MWM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502

Multiple sequence alignment