Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V2198_RS01690 Genome accession   NZ_CP143900
Coordinates   345408..345773 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340408..350773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2198_RS01675 (V2198_01675) pilK 341752..342627 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  V2198_RS01680 (V2198_01680) pilJ 342688..344736 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  V2198_RS01685 (V2198_01685) - 344821..345357 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  V2198_RS01690 (V2198_01690) pilH 345408..345773 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  V2198_RS01695 (V2198_01695) pilG 345820..346227 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  V2198_RS01700 (V2198_01700) gshB 346482..347435 (+) 954 WP_073657364.1 glutathione synthase -
  V2198_RS01705 (V2198_01705) - 347582..348475 (+) 894 WP_003084580.1 TonB family protein -
  V2198_RS01710 (V2198_01710) - 348524..349093 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  V2198_RS01715 (V2198_01715) ruvX 349093..349527 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  V2198_RS01720 (V2198_01720) pyrR 349639..350151 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=844936 V2198_RS01690 WP_003084587.1 345408..345773(-) (pilH) [Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=844936 V2198_RS01690 WP_003084587.1 345408..345773(-) (pilH) [Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364