Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRT02_RS07600 Genome accession   NZ_CP127867
Coordinates   1453962..1455332 (-) Length   456 a.a.
NCBI ID   WP_002833248.1    Uniprot ID   A0AAU7NM61
Organism   Pediococcus pentosaceus strain SMFM2016-WK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448962..1460332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT02_RS07580 - 1449258..1449671 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  QRT02_RS07585 cysS 1449664..1451076 (-) 1413 WP_128887360.1 cysteine--tRNA ligase -
  QRT02_RS07590 gltX 1451257..1452744 (-) 1488 WP_270217035.1 glutamate--tRNA ligase -
  QRT02_RS07595 - 1452814..1453944 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  QRT02_RS07600 radA 1453962..1455332 (-) 1371 WP_002833248.1 DNA repair protein RadA Machinery gene
  QRT02_RS07605 - 1455432..1455965 (-) 534 WP_002833247.1 dUTP diphosphatase -
  QRT02_RS07610 - 1456102..1456431 (+) 330 WP_023440692.1 GNAT family N-acetyltransferase -
  QRT02_RS07615 rpiA 1456435..1457121 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  QRT02_RS07620 - 1457191..1458537 (+) 1347 WP_023440693.1 C1 family peptidase -
  QRT02_RS07625 - 1458613..1458993 (-) 381 WP_286102846.1 helix-turn-helix domain-containing protein -
  QRT02_RS07630 - 1459057..1460244 (-) 1188 WP_023440694.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50360.80 Da        Isoelectric Point: 6.7620

>NTDB_id=844864 QRT02_RS07600 WP_002833248.1 1453962..1455332(-) (radA) [Pediococcus pentosaceus strain SMFM2016-WK1]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=844864 QRT02_RS07600 WP_002833248.1 1453962..1455332(-) (radA) [Pediococcus pentosaceus strain SMFM2016-WK1]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGACGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAACTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGGGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGAGTAGTGGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGTAAGTCGACCCTATT
GTTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTGTACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus mitis SK321

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651