Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   V2200_RS23525 Genome accession   NZ_CP143898
Coordinates   4976988..4977317 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4971988..4982317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2200_RS23510 (V2200_23510) - 4972688..4973647 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  V2200_RS23515 (V2200_23515) - 4973644..4974669 (+) 1026 WP_004350972.1 MraY family glycosyltransferase -
  V2200_RS23520 (V2200_23520) - 4974800..4976797 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  V2200_RS23525 (V2200_23525) comEA/comE1 4976988..4977317 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  V2200_RS23535 (V2200_23535) - 4977534..4978730 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  V2200_RS23540 (V2200_23540) uvrB 4978918..4980930 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=844795 V2200_RS23525 WP_003104586.1 4976988..4977317(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=844795 V2200_RS23525 WP_003104586.1 4976988..4977317(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385