Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QR692_RS11160 Genome accession   NZ_CP127854
Coordinates   2255147..2256190 (-) Length   347 a.a.
NCBI ID   WP_019291940.1    Uniprot ID   -
Organism   Lactococcus petauri strain GB97     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2250147..2261190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR692_RS11145 (QR692_11145) rpsB 2250180..2250953 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  QR692_RS11150 (QR692_11150) - 2251226..2252266 (+) 1041 WP_019291938.1 lactonase family protein -
  QR692_RS11155 (QR692_11155) adhE 2252422..2255115 (+) 2694 WP_019291939.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  QR692_RS11160 (QR692_11160) sepM 2255147..2256190 (-) 1044 WP_019291940.1 SepM family pheromone-processing serine protease Regulator
  QR692_RS11165 (QR692_11165) coaD 2256180..2256677 (-) 498 WP_019291941.1 pantetheine-phosphate adenylyltransferase -
  QR692_RS11170 (QR692_11170) rsmD 2256667..2257206 (-) 540 WP_019293304.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QR692_RS11175 (QR692_11175) - 2257305..2258651 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37744.08 Da        Isoelectric Point: 7.9913

>NTDB_id=844778 QR692_RS11160 WP_019291940.1 2255147..2256190(-) (sepM) [Lactococcus petauri strain GB97]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNALQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDSVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=844778 QR692_RS11160 WP_019291940.1 2255147..2256190(-) (sepM) [Lactococcus petauri strain GB97]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGCCTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAGCGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACAATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49