Detailed information NTG0844728

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V2200_RS06060
• Genome accession: NZ_CP143898
• Coordinates: 1225595..1228444 (+)
• Length: 949 a.a.
• NCBI ID: WP_023083185.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1220595..1233444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2200_RS06025 (V2200_06025)	-	1220780..1220998 (-)	219	WP_016852009.1	AlpA family transcriptional regulator	-
V2200_RS06030 (V2200_06030)	-	1221140..1221898 (-)	759	WP_003454930.1	hypothetical protein	-
V2200_RS06035 (V2200_06035)	-	1222438..1223346 (-)	909	WP_012761385.1	LysR family transcriptional regulator	-
V2200_RS06040 (V2200_06040)	-	1223486..1223915 (+)	430	Protein_1192	IS66 family transposase	-
V2200_RS31495	-	1224037..1224270 (-)	234	Protein_1193	IS110 family transposase	-
V2200_RS06050 (V2200_06050)	-	1224615..1224887 (+)	273	Protein_1194	helix-turn-helix domain-containing protein	-
V2200_RS06055 (V2200_06055)	-	1224932..1225501 (+)	570	WP_023083184.1	Hsp20/alpha crystallin family protein	-
V2200_RS06060 (V2200_06060)	clpC	1225595..1228444 (+)	2850	WP_023083185.1	heat shock survival AAA family ATPase ClpK	Regulator
V2200_RS06065 (V2200_06065)	cls	1228461..1229891 (+)	1431	WP_023083186.1	cardiolipin synthase	-
V2200_RS06070 (V2200_06070)	ftsH	1229919..1231748 (+)	1830	WP_023083187.1	ATP-dependent zinc metalloprotease FtsH	-
V2200_RS06075 (V2200_06075)	hsp20-GI	1231827..1232285 (+)	459	WP_019485624.1	small heat shock protein sHSP20-GI	-
V2200_RS06080 (V2200_06080)	yfdX1	1232307..1233215 (+)	909	WP_019485625.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104324.16 Da
• Isoelectric Point: 5.8094

>NTDB_id=844728 V2200_RS06060 WP_023083185.1 1225595..1228444(+) (clpC) [Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27]
MARKQCQVCGQSATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSVAA
DADEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTIAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKETELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPAAQPAEPEKPDAANVAEAPPNGESKPARKKKSAGGGS

Nucleotide

• Length: 2850 bp

>NTDB_id=844728 V2200_RS06060 WP_023083185.1 1225595..1228444(+) (clpC) [Pseudomonas aeruginosa strain PA11_WM3_21.22_ST27]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGTCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAGGCTCTGTTTG
GCTCGCGCAGCGGTTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATGCACCGTCCGTGGCGGCT
GATGCCGACGAAGTGGTCGATGCGTCTTTCGGCGAATCCGCTCCCGCAACGGCGGGCACGGCGCGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGATAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAAGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCCAAGGAGACTGAACTCAAGAAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAGGGCGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAACCCTACAGCGTGTTGTTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTATTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAACCCGAGTTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCA
CGCGAGATGCTCGGTGGTGGCATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGATGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCAGCCGCGCAGCCGGCCGAGCCTGAAAAGCCCGATGCAGCGAACGTGGCCGAGGCACCGCCGAACG
GCGAGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGGATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.692	83.772	0.425
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.59	86.301	0.376
clpC	Streptococcus thermophilus LMD-9	41.869	86.828	0.364
clpC	Streptococcus mutans UA159	42.086	85.88	0.361
clpC	Streptococcus thermophilus LMG 18311	41.778	86.512	0.361