Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QRT07_RS17845 Genome accession   NZ_CP127847
Coordinates   558431..559528 (-) Length   365 a.a.
NCBI ID   WP_025635968.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 553431..564528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS17830 (QRT07_17830) - 554095..555150 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  QRT07_RS17835 (QRT07_17835) - 555188..555643 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  QRT07_RS17840 (QRT07_17840) luxQ 555855..558431 (-) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QRT07_RS17845 (QRT07_17845) luxP 558431..559528 (-) 1098 WP_025635968.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QRT07_RS17850 (QRT07_17850) - 559880..560200 (-) 321 WP_025635389.1 GIY-YIG nuclease family protein -
  QRT07_RS17855 (QRT07_17855) - 560197..560847 (-) 651 WP_017447360.1 YceH family protein -
  QRT07_RS17860 (QRT07_17860) - 561024..561239 (-) 216 WP_005477197.1 hypothetical protein -
  QRT07_RS17865 (QRT07_17865) - 561567..561881 (+) 315 WP_005453573.1 DUF496 family protein -
  QRT07_RS17870 (QRT07_17870) - 562004..563341 (+) 1338 WP_025635387.1 MATE family efflux transporter -
  QRT07_RS17875 (QRT07_17875) - 563415..564392 (-) 978 WP_005477354.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41325.64 Da        Isoelectric Point: 5.0533

>NTDB_id=844712 QRT07_RS17845 WP_025635968.1 558431..559528(-) (luxP) [Vibrio parahaemolyticus strain VP16]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPDKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=844712 QRT07_RS17845 WP_025635968.1 558431..559528(-) (luxP) [Vibrio parahaemolyticus strain VP16]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGATAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644