Detailed information NTG0844703

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QRT07_RS13945
• Genome accession: NZ_CP127846
• Coordinates: 2994874..2995920 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP16
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2989874..3000920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRT07_RS13925 (QRT07_13925)	rplC	2990447..2991076 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
QRT07_RS13930 (QRT07_13930)	rpsJ	2991091..2991402 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
QRT07_RS13935 (QRT07_13935)	rpmE	2991860..2992081 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
QRT07_RS13940 (QRT07_13940)	priA	2992376..2994580 (+)	2205	WP_025635765.1	primosomal protein N'	-
QRT07_RS13945 (QRT07_13945)	cytR	2994874..2995920 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
QRT07_RS13950 (QRT07_13950)	ftsN	2996097..2996642 (+)	546	WP_025635768.1	cell division protein FtsN	-
QRT07_RS13955 (QRT07_13955)	hslV	2996807..2997358 (+)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
QRT07_RS13960 (QRT07_13960)	hslU	2997382..2998713 (+)	1332	WP_021449544.1	HslU--HslV peptidase ATPase subunit	-
QRT07_RS13965 (QRT07_13965)	-	2998898..2999815 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QRT07_RS13970 (QRT07_13970)	rraA	2999892..3000404 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
QRT07_RS13975 (QRT07_13975)	zapB	3000509..3000751 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=844703 QRT07_RS13945 WP_254894148.1 2994874..2995920(+) (cytR) [Vibrio parahaemolyticus strain VP16]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=844703 QRT07_RS13945 WP_254894148.1 2994874..2995920(+) (cytR) [Vibrio parahaemolyticus strain VP16]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAATTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871