Detailed information NTG0844682

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRT07_RS02935
• Genome accession: NZ_CP127846
• Coordinates: 605690..606676 (+)
• Length: 328 a.a.
• NCBI ID: WP_021450997.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 600690..611676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRT07_RS02900 (QRT07_02900)	ftsB	600698..600979 (+)	282	WP_005455577.1	cell division protein FtsB	-
QRT07_RS02905 (QRT07_02905)	ispD	600981..601685 (+)	705	WP_025500981.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QRT07_RS02910 (QRT07_02910)	ispF	601703..602179 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRT07_RS02915 (QRT07_02915)	truD	602226..603269 (+)	1044	WP_025500980.1	tRNA pseudouridine(13) synthase TruD	-
QRT07_RS02920 (QRT07_02920)	surE	603269..604045 (+)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
QRT07_RS02925 (QRT07_02925)	-	604045..604671 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QRT07_RS02930 (QRT07_02930)	-	604686..605609 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QRT07_RS02935 (QRT07_02935)	rpoS	605690..606676 (+)	987	WP_021450997.1	RNA polymerase sigma factor RpoS	Regulator
QRT07_RS02940 (QRT07_02940)	mutS	606756..609317 (-)	2562	WP_020835389.1	DNA mismatch repair protein MutS	-
QRT07_RS02945 (QRT07_02945)	pncC	609402..609884 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
QRT07_RS02950 (QRT07_02950)	recA	610085..611128 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37431.27 Da
• Isoelectric Point: 4.6433

>NTDB_id=844682 QRT07_RS02935 WP_021450997.1 605690..606676(+) (rpoS) [Vibrio parahaemolyticus strain VP16]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=844682 QRT07_RS02935 WP_021450997.1 605690..606676(+) (rpoS) [Vibrio parahaemolyticus strain VP16]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGTCCTTTACGCCCGCAGAGCATTGCGT
GGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAACCG
TGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACCATT
CGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCATGA
ACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGCGTA
TTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCTGAT
CCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAAAGA
AGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTACCC
GTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATGGAA
AACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851