Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QRT07_RS01605 Genome accession   NZ_CP127846
Coordinates   337377..337892 (+) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain VP16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332377..342892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS01585 (QRT07_01585) - 332510..335080 (-) 2571 WP_025634560.1 PBP1A family penicillin-binding protein -
  QRT07_RS01590 (QRT07_01590) pilM 335223..336239 (+) 1017 WP_025634558.1 type IV pilus assembly protein PilM Machinery gene
  QRT07_RS01595 (QRT07_01595) pilN 336223..336801 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QRT07_RS01600 (QRT07_01600) pilO 336794..337387 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QRT07_RS01605 (QRT07_01605) pilP 337377..337892 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QRT07_RS01610 (QRT07_01610) pilQ 337924..339672 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QRT07_RS01615 (QRT07_01615) aroK 339861..340379 (+) 519 WP_005381319.1 shikimate kinase AroK -
  QRT07_RS01620 (QRT07_01620) aroB 340411..341511 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=844675 QRT07_RS01605 WP_005454781.1 337377..337892(+) (pilP) [Vibrio parahaemolyticus strain VP16]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=844675 QRT07_RS01605 WP_005454781.1 337377..337892(+) (pilP) [Vibrio parahaemolyticus strain VP16]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585