Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QRT07_RS01590 Genome accession   NZ_CP127846
Coordinates   335223..336239 (+) Length   338 a.a.
NCBI ID   WP_025634558.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330223..341239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS01575 (QRT07_01575) - 330647..331375 (-) 729 WP_015297397.1 redoxin family protein -
  QRT07_RS01580 (QRT07_01580) oxyR 331546..332454 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  QRT07_RS01585 (QRT07_01585) - 332510..335080 (-) 2571 WP_025634560.1 PBP1A family penicillin-binding protein -
  QRT07_RS01590 (QRT07_01590) pilM 335223..336239 (+) 1017 WP_025634558.1 type IV pilus assembly protein PilM Machinery gene
  QRT07_RS01595 (QRT07_01595) pilN 336223..336801 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QRT07_RS01600 (QRT07_01600) pilO 336794..337387 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QRT07_RS01605 (QRT07_01605) pilP 337377..337892 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QRT07_RS01610 (QRT07_01610) pilQ 337924..339672 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QRT07_RS01615 (QRT07_01615) aroK 339861..340379 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37776.31 Da        Isoelectric Point: 6.8323

>NTDB_id=844672 QRT07_RS01590 WP_025634558.1 335223..336239(+) (pilM) [Vibrio parahaemolyticus strain VP16]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LIDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=844672 QRT07_RS01590 WP_025634558.1 335223..336239(+) (pilM) [Vibrio parahaemolyticus strain VP16]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTCGTACGCCTTCGTGCGGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAAGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGATTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGCTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTCTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAATGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTCTCGCATCAGTTGGCATTGGAGTGCGAGTTGCTAA
ACCCACTAGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGACGAGCGGCTGATTGGCAACATTTTTCGACAGCTGCA
GGGCTGGCGGTCCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

48.368

99.704

0.482