Detailed information NTG0844668

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V2201_RS11645
• Genome accession: NZ_CP143897
• Coordinates: 2519063..2521912 (-)
• Length: 949 a.a.
• NCBI ID: WP_023083185.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA27_WM3_03.23_ST27
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2514063..2526912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2201_RS11625 (V2201_11625)	yfdX1	2514292..2515200 (-)	909	WP_019485625.1	heat resistance protein YfdX1	-
V2201_RS11630 (V2201_11630)	hsp20-GI	2515222..2515680 (-)	459	WP_019485624.1	small heat shock protein sHSP20-GI	-
V2201_RS11635 (V2201_11635)	ftsH	2515759..2517588 (-)	1830	WP_023083187.1	ATP-dependent zinc metalloprotease FtsH	-
V2201_RS11640 (V2201_11640)	cls	2517616..2519046 (-)	1431	WP_023083186.1	cardiolipin synthase	-
V2201_RS11645 (V2201_11645)	clpC	2519063..2521912 (-)	2850	WP_023083185.1	heat shock survival AAA family ATPase ClpK	Regulator
V2201_RS11650 (V2201_11650)	-	2522006..2522575 (-)	570	WP_023083184.1	Hsp20/alpha crystallin family protein	-
V2201_RS11655 (V2201_11655)	-	2522620..2522892 (-)	273	Protein_2287	helix-turn-helix domain-containing protein	-
V2201_RS31490	-	2523237..2523470 (+)	234	Protein_2288	IS110 family transposase	-
V2201_RS11665 (V2201_11665)	-	2523592..2524021 (-)	430	Protein_2289	IS66 family transposase	-
V2201_RS11670 (V2201_11670)	-	2524161..2525069 (+)	909	WP_012761385.1	LysR family transcriptional regulator	-
V2201_RS11675 (V2201_11675)	-	2525609..2526367 (+)	759	WP_003454930.1	hypothetical protein	-
V2201_RS11680 (V2201_11680)	-	2526509..2526727 (+)	219	WP_016852009.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104324.16 Da
• Isoelectric Point: 5.8094

>NTDB_id=844668 V2201_RS11645 WP_023083185.1 2519063..2521912(-) (clpC) [Pseudomonas aeruginosa strain PA27_WM3_03.23_ST27]
MARKQCQVCGQSATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSVAA
DADEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTIAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKETELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPAAQPAEPEKPDAANVAEAPPNGESKPARKKKSAGGGS

Nucleotide

• Length: 2850 bp

>NTDB_id=844668 V2201_RS11645 WP_023083185.1 2519063..2521912(-) (clpC) [Pseudomonas aeruginosa strain PA27_WM3_03.23_ST27]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGTCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAGGCTCTGTTTG
GCTCGCGCAGCGGTTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATGCACCGTCCGTGGCGGCT
GATGCCGACGAAGTGGTCGATGCGTCTTTCGGCGAATCCGCTCCCGCAACGGCGGGCACGGCGCGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGATAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAAGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCCAAGGAGACTGAACTCAAGAAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAGGGCGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAACCCTACAGCGTGTTGTTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTATTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAACCCGAGTTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCA
CGCGAGATGCTCGGTGGTGGCATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGATGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCAGCCGCGCAGCCGGCCGAGCCTGAAAAGCCCGATGCAGCGAACGTGGCCGAGGCACCGCCGAACG
GCGAGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGGATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.692	83.772	0.425
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.59	86.301	0.376
clpC	Streptococcus thermophilus LMD-9	41.869	86.828	0.364
clpC	Streptococcus mutans UA159	42.086	85.88	0.361
clpC	Streptococcus thermophilus LMG 18311	41.778	86.512	0.361