Detailed information
Bioinformatically predicted
Overview
| Name | oppD | Type | Regulator |
| Locus tag | QRS93_RS09105 | Genome accession | NZ_CP127842 |
| Coordinates | 1858305..1859357 (-) | Length | 350 a.a. |
| NCBI ID | WP_012767556.1 | Uniprot ID | A0A9X8T4H4 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1803931..1881321 | 1858305..1859357 | within | 0 |
Gene organization within MGE regions
Location: 1803931..1881321
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRS93_RS08845 (QRS93_08845) | - | 1804451..1805770 (+) | 1320 | Protein_1697 | FAD-containing oxidoreductase | - |
| QRS93_RS08850 (QRS93_08850) | - | 1805863..1808199 (-) | 2337 | WP_015017393.1 | endonuclease MutS2 | - |
| QRS93_RS08855 (QRS93_08855) | - | 1808355..1808900 (-) | 546 | WP_003061010.1 | CvpA family protein | - |
| QRS93_RS08860 (QRS93_08860) | - | 1808903..1809211 (-) | 309 | WP_003052702.1 | hypothetical protein | - |
| QRS93_RS08865 (QRS93_08865) | rnhC | 1809368..1810267 (+) | 900 | WP_042357991.1 | ribonuclease HIII | - |
| QRS93_RS08870 (QRS93_08870) | lepB | 1810289..1810882 (+) | 594 | WP_012767541.1 | signal peptidase I | - |
| QRS93_RS08875 (QRS93_08875) | - | 1810942..1813395 (+) | 2454 | WP_015017395.1 | ATP-dependent RecD-like DNA helicase | - |
| QRS93_RS08880 (QRS93_08880) | - | 1813486..1813974 (+) | 489 | WP_003056836.1 | hypothetical protein | - |
| QRS93_RS08885 (QRS93_08885) | dinB | 1814063..1815160 (-) | 1098 | WP_015017396.1 | DNA polymerase IV | - |
| QRS93_RS08890 (QRS93_08890) | pflB | 1815369..1817696 (+) | 2328 | WP_003056840.1 | formate C-acetyltransferase | - |
| QRS93_RS08895 (QRS93_08895) | - | 1817801..1818253 (+) | 453 | WP_003056842.1 | GNAT family N-acetyltransferase | - |
| QRS93_RS08900 (QRS93_08900) | - | 1818377..1820284 (-) | 1908 | WP_015017398.1 | glycoside hydrolase family 13 protein | - |
| QRS93_RS08905 (QRS93_08905) | - | 1820371..1821942 (-) | 1572 | WP_003062409.1 | extracellular solute-binding protein | - |
| QRS93_RS08910 (QRS93_08910) | - | 1821998..1822660 (-) | 663 | WP_003060890.1 | DUF624 domain-containing protein | - |
| QRS93_RS08915 (QRS93_08915) | - | 1822672..1823571 (-) | 900 | WP_003059927.1 | carbohydrate ABC transporter permease | - |
| QRS93_RS08920 (QRS93_08920) | - | 1823584..1824522 (-) | 939 | WP_003056823.1 | ABC transporter permease subunit | - |
| QRS93_RS08925 (QRS93_08925) | - | 1825129..1826160 (+) | 1032 | WP_003056847.1 | LacI family DNA-binding transcriptional regulator | - |
| QRS93_RS08930 (QRS93_08930) | - | 1826272..1827207 (-) | 936 | WP_003056846.1 | serine hydrolase domain-containing protein | - |
| QRS93_RS08935 (QRS93_08935) | - | 1827204..1827956 (-) | 753 | WP_003056834.1 | CppA N-terminal domain-containing protein | - |
| QRS93_RS08940 (QRS93_08940) | - | 1828218..1829123 (+) | 906 | WP_003060954.1 | sulfite exporter TauE/SafE family protein | - |
| QRS93_RS08945 (QRS93_08945) | gla | 1829227..1830075 (-) | 849 | WP_003054261.1 | aquaglyceroporin Gla | - |
| QRS93_RS08950 (QRS93_08950) | - | 1830202..1832484 (+) | 2283 | WP_003061570.1 | Xaa-Pro dipeptidyl-peptidase | - |
| QRS93_RS08955 (QRS93_08955) | - | 1832557..1832949 (-) | 393 | WP_003054260.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| QRS93_RS08960 (QRS93_08960) | - | 1833119..1833340 (-) | 222 | WP_003060222.1 | helix-turn-helix transcriptional regulator | - |
| QRS93_RS08965 (QRS93_08965) | - | 1833510..1833884 (+) | 375 | WP_003056692.1 | helix-turn-helix transcriptional regulator | - |
| QRS93_RS08970 (QRS93_08970) | - | 1834447..1834926 (-) | 480 | WP_227985708.1 | hypothetical protein | - |
| QRS93_RS08975 (QRS93_08975) | - | 1835157..1836347 (-) | 1191 | WP_002983018.1 | site-specific integrase | - |
| QRS93_RS08980 (QRS93_08980) | - | 1836423..1836626 (-) | 204 | WP_002983016.1 | excisionase | - |
| QRS93_RS08985 (QRS93_08985) | - | 1837055..1837306 (-) | 252 | WP_002983011.1 | helix-turn-helix domain-containing protein | - |
| QRS93_RS08990 (QRS93_08990) | - | 1837287..1837730 (-) | 444 | WP_009220377.1 | sigma-70 family RNA polymerase sigma factor | - |
| QRS93_RS08995 (QRS93_08995) | - | 1838235..1839701 (-) | 1467 | WP_049519736.1 | energy-coupling factor ABC transporter ATP-binding protein | - |
| QRS93_RS09000 (QRS93_09000) | - | 1839729..1840418 (-) | 690 | WP_231846835.1 | energy-coupling factor transporter transmembrane component T | - |
| QRS93_RS09005 (QRS93_09005) | - | 1840460..1841095 (-) | 636 | WP_227985709.1 | MptD family putative ECF transporter S component | - |
| QRS93_RS09010 (QRS93_09010) | - | 1841098..1842840 (-) | 1743 | WP_003060864.1 | ABC transporter ATP-binding protein | - |
| QRS93_RS09015 (QRS93_09015) | - | 1842833..1844620 (-) | 1788 | WP_002982991.1 | ABC transporter ATP-binding protein | - |
| QRS93_RS09020 (QRS93_09020) | - | 1844820..1845434 (+) | 615 | WP_002982989.1 | TetR/AcrR family transcriptional regulator | - |
| QRS93_RS09025 (QRS93_09025) | - | 1845765..1846373 (+) | 609 | WP_002982976.1 | replication protein | - |
| QRS93_RS09030 (QRS93_09030) | - | 1846348..1846593 (+) | 246 | WP_002982972.1 | DUF3173 family protein | - |
| QRS93_RS09035 (QRS93_09035) | - | 1846595..1847746 (+) | 1152 | WP_032467247.1 | site-specific integrase | - |
| QRS93_RS09040 (QRS93_09040) | - | 1847824..1848123 (+) | 300 | WP_002982967.1 | YbaB/EbfC family nucleoid-associated protein | - |
| QRS93_RS09045 (QRS93_09045) | - | 1848180..1848917 (-) | 738 | WP_002982961.1 | MerR family transcriptional regulator | - |
| QRS93_RS09050 (QRS93_09050) | - | 1849070..1849657 (-) | 588 | WP_014612583.1 | 3'-5' exonuclease | - |
| QRS93_RS09055 (QRS93_09055) | - | 1849705..1850235 (-) | 531 | WP_002992269.1 | DUF536 domain-containing protein | - |
| QRS93_RS09060 (QRS93_09060) | - | 1850439..1851614 (+) | 1176 | WP_015017408.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| QRS93_RS09065 (QRS93_09065) | - | 1851674..1851922 (-) | 249 | WP_042357993.1 | hypothetical protein | - |
| QRS93_RS09070 (QRS93_09070) | rpsN | 1852270..1852539 (+) | 270 | WP_003052772.1 | 30S ribosomal protein S14 | - |
| QRS93_RS09075 (QRS93_09075) | tsaD | 1852869..1853885 (-) | 1017 | WP_003056674.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| QRS93_RS09080 (QRS93_09080) | rimI | 1853875..1854300 (-) | 426 | WP_042357994.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| QRS93_RS09085 (QRS93_09085) | tsaB | 1854302..1855000 (-) | 699 | WP_003062223.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| QRS93_RS09090 (QRS93_09090) | - | 1855286..1855516 (+) | 231 | WP_003056704.1 | DNA-dependent RNA polymerase subunit epsilon | - |
| QRS93_RS09095 (QRS93_09095) | rnjA | 1855518..1857200 (+) | 1683 | WP_003056700.1 | ribonuclease J1 | - |
| QRS93_RS09100 (QRS93_09100) | amiF | 1857380..1858312 (-) | 933 | WP_003060110.1 | ATP-binding cassette domain-containing protein | Regulator |
| QRS93_RS09105 (QRS93_09105) | oppD | 1858305..1859357 (-) | 1053 | WP_012767556.1 | ABC transporter ATP-binding protein | Regulator |
| QRS93_RS09110 (QRS93_09110) | - | 1859369..1860400 (-) | 1032 | WP_003058013.1 | ABC transporter permease | - |
| QRS93_RS09115 (QRS93_09115) | - | 1860410..1861324 (-) | 915 | WP_003052794.1 | ABC transporter permease | - |
| QRS93_RS09120 (QRS93_09120) | - | 1861592..1863247 (-) | 1656 | WP_003058031.1 | peptide ABC transporter substrate-binding protein | - |
| QRS93_RS09125 (QRS93_09125) | glnA | 1863480..1864826 (-) | 1347 | WP_015017410.1 | type I glutamate--ammonia ligase | - |
| QRS93_RS09130 (QRS93_09130) | - | 1864864..1865235 (-) | 372 | WP_003058022.1 | MerR family transcriptional regulator | - |
| QRS93_RS09135 (QRS93_09135) | - | 1865312..1865833 (-) | 522 | WP_022555146.1 | aromatic acid exporter family protein | - |
| QRS93_RS09140 (QRS93_09140) | - | 1866330..1867526 (-) | 1197 | WP_003058011.1 | phosphoglycerate kinase | - |
| QRS93_RS09145 (QRS93_09145) | - | 1867710..1868567 (-) | 858 | WP_015017413.1 | 5'-nucleotidase, lipoprotein e(P4) family | - |
| QRS93_RS09150 (QRS93_09150) | gap | 1868750..1869760 (-) | 1011 | WP_003052840.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| QRS93_RS09155 (QRS93_09155) | fusA | 1870100..1872178 (-) | 2079 | WP_003058029.1 | elongation factor G | - |
| QRS93_RS09160 (QRS93_09160) | rpsG | 1872596..1873066 (-) | 471 | WP_002992078.1 | 30S ribosomal protein S7 | - |
| QRS93_RS09165 (QRS93_09165) | rpsL | 1873087..1873500 (-) | 414 | WP_003052844.1 | 30S ribosomal protein S12 | - |
| QRS93_RS09170 (QRS93_09170) | - | 1873761..1876382 (-) | 2622 | WP_042357995.1 | SEC10/PgrA surface exclusion domain-containing protein | - |
| QRS93_RS09175 (QRS93_09175) | purR | 1876373..1877212 (-) | 840 | WP_003058017.1 | pur operon repressor | - |
| QRS93_RS09180 (QRS93_09180) | - | 1877312..1878250 (-) | 939 | WP_012767558.1 | 3'-5' exoribonuclease YhaM family protein | - |
| QRS93_RS09185 (QRS93_09185) | - | 1878240..1879511 (-) | 1272 | WP_003060141.1 | DNA recombination protein RmuC | - |
| QRS93_RS09190 (QRS93_09190) | - | 1879513..1880145 (-) | 633 | WP_003056070.1 | thiamine diphosphokinase | - |
| QRS93_RS09195 (QRS93_09195) | rpe | 1880138..1880800 (-) | 663 | WP_015017416.1 | ribulose-phosphate 3-epimerase | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38667.36 Da Isoelectric Point: 5.8490
>NTDB_id=844639 QRS93_RS09105 WP_012767556.1 1858305..1859357(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNAL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQKALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNAL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQKALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE
Nucleotide
Download Length: 1053 bp
>NTDB_id=844639 QRS93_RS09105 WP_012767556.1 1858305..1859357(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
CGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAACTCAATGCCCTT
AAGGAAGAAGAATGGGTTAAGGTACGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATTAGTAAGCAAAAAGCCTTGAGTCGTGCTC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATCGCTCTCGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCACTTGA
TGTTACCATTCAGGCACAAATCTTGAAATTAATGAAAGAAATCCAACAACAGACGGAATCATCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGACCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCGCAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACCACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCAGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
CGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAACTCAATGCCCTT
AAGGAAGAAGAATGGGTTAAGGTACGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATTAGTAAGCAAAAAGCCTTGAGTCGTGCTC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATCGCTCTCGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCACTTGA
TGTTACCATTCAGGCACAAATCTTGAAATTAATGAAAGAAATCCAACAACAGACGGAATCATCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGACCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCGCAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACCACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCAGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| oppD | Streptococcus mutans UA159 |
79.429 |
100 |
0.794 |
| amiE | Streptococcus salivarius strain HSISS4 |
55.394 |
98 |
0.543 |
| amiE | Streptococcus thermophilus LMG 18311 |
56.325 |
94.857 |
0.534 |
| amiE | Streptococcus thermophilus LMD-9 |
56.325 |
94.857 |
0.534 |